Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq744 401 9e-110 seq1258 194 3e-47 seq1136 188 1e-45 seq336 188 1e-45 seq213 185 1e-44 seq1315 179 6e-43 seq746 140 5e-31 >seq744 Length=2546 Score = 401 bits (444), Expect = 9e-110 Identities = 245/256 (96%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 777 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 834 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 835 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 894 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 895 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 954 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 955 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 1014 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 1015 GCCATAGTCCCTCTAA 1030 >seq1258 Length=356075 Score = 194 bits (214), Expect = 3e-47 Identities = 176/218 (81%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||| ||| |||||| ||| |||| |||||| | Sbjct 1271 GTACAAAGGGCAGGGACGTAATCAACGCGCGCT-GATGACACGCATCTACTGGGAATT-C 1328 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | || ||||||||| | ||||| | ||||| | |||| || || Sbjct 1329 CTCGTTCATGGGAAATAATTGCAATCCCCGATCCCTAGCACGAAGGCGGTTCAGCAGGTT 1388 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| ||||| |||| || ||||||| ||| | ||| ||||||||||||||| Sbjct 1389 ACCCGCACCTTTCGGCGAAGGCGAAAGACTCGCTGATGCCTTCATTGTAGCGCGCGTGCG 1448 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| | ||||||||||||||||||||||||||||||| Sbjct 1449 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 1486 >seq1136 Length=385506 Score = 188 bits (208), Expect = 1e-45 Identities = 175/218 (80%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||| ||| |||||| ||| |||| |||||| | Sbjct 137944 GTACAAAGGGCAGGGACGTAATCAACGCGCGCT-GATGACACGCATCTACTGGGAATT-C 138001 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | | ||||||||| | ||||| | ||||| | |||| || || Sbjct 138002 CTCGTTCATGGGAGATAATTGCAATCCCCGATCCCTAGCACGAAGGCGGTTCAGCAGGTT 138061 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| ||||| |||| || ||||||| ||| | ||| ||||||||||||||| Sbjct 138062 ACCCGCACCTTTCGGCGAAGGCGAAAGACTCGCTGATGCCTTCATTGTAGCGCGCGTGCG 138121 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| | ||||||||||||||||||||||||||||||| Sbjct 138122 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 138159 >seq336 Length=836981 Score = 188 bits (208), Expect = 1e-45 Identities = 175/218 (80%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||| ||| |||||| ||| ||||| |||||| | Sbjct 740630 GTACAAAGGGCAGGGACGTAATCAACGCGCGCT-GATGACACGCATTTACTGGGAATT-C 740573 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | | ||||||||| | ||||| | ||| | | |||| || || Sbjct 740572 CTCGTTCATGGGAGATAATTGCAATCCCCGATCCCTAGCACAAAGGCGGTTCAGCAGGTT 740513 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| ||||| |||| || ||||||| ||| | ||| ||||||||||||||| Sbjct 740512 ACCCGCACCTTTCGGCGAAGGCGAAAGACTCGCTGATGCCTTCATTGTAGCGCGCGTGCG 740453 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| | ||||||||||||||||||||||||||||||| Sbjct 740452 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 740415 >seq213 Length=1041034 Score = 185 bits (204), Expect = 1e-44 Identities = 174/218 (80%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||| ||| |||||| ||| ||||| |||||| | Sbjct 234325 GTACAAAGGGCAGGGACGTAATCAACGCGCGCT-GATGACACGCATTTACTGGGAATT-C 234382 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | | ||||||||| | ||||| ||||||| | |||| || || Sbjct 234383 CTCGTTCATGGGAGATAATTGCAATCCCCGATCCCTATCACGAAGGCGGTTCAGCAGGTT 234442 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| || | ||||| |||| || ||||||| ||| | ||| ||||||||| ||||| Sbjct 234443 ACCCGCACATTTCGGCGAAGGCGAAAGACTCGCTGATGCCTTCATTGTAGCGCGGGTGCG 234502 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| | || |||||||||||||||||||||||||||| Sbjct 234503 GCCCCGGACTTCTAAGGGCATCACAGACCTGTTATTGC 234540 >seq1315 Length=1337 Score = 179 bits (198), Expect = 6e-43 Identities = 173/218 (79%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| ||| |||||| ||| |||| |||||| | Sbjct 516 GTACAAAGGGCAGGGACGTAATCAACGCACGCT-GATGACACGCATCTACTGGGAATT-C 459 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 || ||| | | | ||||||||| | ||||| | ||||| | |||| || || Sbjct 458 CTAGTTCATGGGAGATAATTGCAATCCCCGATCCCTAGCACGAAGGCGGTTCAGCAGGTT 399 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| ||||| |||| || ||||||| ||| | ||| ||||||||||||||| Sbjct 398 ACCCGCACCTTTCGGCGAAGGCGAAAGACTCGCTGATGCCTTCATTGTAGCGCGCGTGCG 339 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| | ||||||||||||||||||||||||||||||| Sbjct 338 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 301 >seq746 Length=572904 Score = 140 bits (154), Expect = 5e-31 Identities = 117/142 (82%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 77 AATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATTACCCGGACCTGTCGGC 135 ||||||||| | ||||||||||||| | |||| || ||||||| |||| ||||| Sbjct 265423 AATTGCAATCTCCGATCCCCATCACGAAGGCGGTTCAGCAGGTTACCCGCACCTTTCGGC 265364 Query 136 CAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAG 195 |||| || ||||||| ||| | ||| ||||||||||||||||||| | ||||||||| Sbjct 265363 GAAGGCGAAAGACTCGCTGATGCCTTCAATGTAGCGCGCGTGCGGCCCCGGACATCTAAG 265304 Query 196 GGCATCACAGACCTGTTATTGC 217 |||||||||||||||||||||| Sbjct 265303 GGCATCACAGACCTGTTATTGC 265282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751983186220