Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21]
2,308 sequences; 426,123,519 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq744 235 1e-59
seq1258 196 9e-48
seq2053 194 3e-47
seq746 194 3e-47
seq213 183 6e-44
seq1136 150 3e-34
seq2267 98.7 2e-18
>seq744
Length=2546
Score = 235 bits (260), Expect = 1e-59
Identities = 245/316 (78%), Gaps = 8/316 (3%)
Strand=Plus/Minus
Query 9 CCGGCCGGGCCTTTCCTTCTG---GGGATCCGCA--TGCCCTTCACTGGGTGTGCCGGGG 63
|||| ||| | | ||||||| | ||| ||| || |||| ||||| | | || |
Sbjct 1738 CCGGTCGGCTCGTCCCTTCTGCCGGCGATGCGCTCCTGGCCTTAACTGGCCGGGTCGTGC 1679
Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATAC 122
|| | || |||||||||| ||||||||||| |||||||| |||| |||| | ||||
Sbjct 1678 CTCCGGCGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATAC 1619
Query 123 ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC 182
|||||||||| |||| |||||| | || | |||||||||||| | ||| ||
Sbjct 1618 ATTAGCATGGGATAACGTCATAGGATTT-CGATCCTATTTTGTTGGCCTTCGGGATCGGA 1560
Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242
||||||||||| ||||| ||||||||| | ||||| || ||||||||||||||||||
Sbjct 1559 GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 1500
Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302
|||||||| ||||| ||| ||||||||||| || ||||||||||||||||||||||
Sbjct 1499 GGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-A 1441
Query 303 GAACGAAAGTTAGGGG 318
||||||||||| ||||
Sbjct 1440 GAACGAAAGTTGGGGG 1425
>seq1258
Length=356075
Score = 196 bits (216), Expect = 9e-48
Identities = 212/276 (77%), Gaps = 4/276 (1%)
Strand=Plus/Minus
Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99
||| ||| |||| ||| ||||| ||| | | ||||||||||||||||||||||||||
Sbjct 2196 TGCTCTTAACTGAGTGCCTCGGGGTGCCGGAGCGTTTACTTTGAAAAAATTAGAGTGTTC 2137
Query 100 AAAGCAGGCCTTT-GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158
||||||||||| || ||||| |||||||||||| ||||||||| | |||||||
Sbjct 2136 AAAGCAGGCCTGGCGCCTGAATAGTGGTGCATGGAATAATGGAATAGGACCT-CGGTTCT 2078
Query 159 ATTTTGTTGGTTTCTAGGACC-GCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTA 217
|||| |||||||| | || | |||||||| || ||||| | |||||| | |||
Sbjct 2077 ATTTCGTTGGTTTTCTGAACGTGAGGTAATGATCAAGAGGGACGGACGGGGGCATTCGTA 2018
Query 218 TTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTC 277
|| | ||||||||||||||||||| ||||| ||| ||||||||||| ||
Sbjct 2017 TTGCGGCGGGAGAGGTGAAATTCTTGGATCGCCGCAAGACGAACCACTGCGAAAGCATTT 1958
Query 278 ACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313
||||| ||||||||||| |||| |||||||||||
Sbjct 1957 GCCAAGAATGTTTTCATTGATCA-AGAACGAAAGTT 1923
>seq2053
Length=1627121
Score = 194 bits (214), Expect = 3e-47
Identities = 213/277 (77%), Gaps = 6/277 (2%)
Strand=Plus/Plus
Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99
||| ||| |||| ||| ||||| ||| | | ||||||||||||||||||||||||||
Sbjct 1626742 TGCTCTTAACTGAGTGCCTCGGGGTGCCGGAGCGTTTACTTTGAAAAAATTAGAGTGTTC 1626801
Query 100 AAAGCAGGCCT-TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158
||||||||||| || ||||| |||||||||||| ||||||||| | |||||||
Sbjct 1626802 AAAGCAGGCCTGGCGCCTGAATAGTGGTGCATGGAATAATGGAATAGGACCT-CGGTTCT 1626860
Query 159 ATTTTGTTGGTTTCTAGGACC--GCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216
|||| |||||||| | ||| | | |||||||| || ||||| | |||||| | ||
Sbjct 1626861 ATTTCGTTGGTTT-TCGGAACGTGAGGTAATGATCAAGAGGGACGGACGGGGGCATTCGT 1626919
Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276
||| | ||||||||||||||||||| | ||| ||| ||||||||||| ||
Sbjct 1626920 ATTGCGGCGGGAGAGGTGAAATTCTTGGATCGCCGCAGGACGAACCACTGCGAAAGCATT 1626979
Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313
||||| ||||||||||| |||| |||||||||||
Sbjct 1626980 TGCCAAGAATGTTTTCATTGATCA-AGAACGAAAGTT 1627015
>seq746
Length=572904
Score = 194 bits (214), Expect = 3e-47
Identities = 213/277 (77%), Gaps = 6/277 (2%)
Strand=Plus/Plus
Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99
||| ||| |||| ||| ||||| ||| | | ||||||||||||||||||||||||||
Sbjct 264572 TGCTCTTAACTGAGTGCCTCGGGGTGCCGGAGCGTTTACTTTGAAAAAATTAGAGTGTTC 264631
Query 100 AAAGCAGGCCT-TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158
||||||||||| || ||||| |||||||||||| ||||||||| | |||||||
Sbjct 264632 AAAGCAGGCCTGGCGCCTGAATAGTGGTGCATGGAATAATGGAATAGGACCT-CGGTTCT 264690
Query 159 ATTTTGTTGGTTTCTAGGACC--GCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216
|||| |||||||| | ||| | | |||||||| || ||||| | |||||| | ||
Sbjct 264691 ATTTCGTTGGTTT-TCGGAACGTGAGGTAATGATCAAGAGGGACGGACGGGGGCATTCGT 264749
Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276
||| | ||||||||||| ||||||| ||||| ||| ||||||||||| ||
Sbjct 264750 ATTGCGGCGGGAGAGGTGAAATCCTTGGATCGCCGCAAGACGAACCACTGCGAAAGCATT 264809
Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313
||||| ||||||||||| |||| |||||||||||
Sbjct 264810 TGCCAAGAATGTTTTCATTGATCA-AGAACGAAAGTT 264845
>seq213
Length=1041034
Score = 183 bits (202), Expect = 6e-44
Identities = 208/273 (76%), Gaps = 6/273 (2%)
Strand=Plus/Minus
Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99
||| ||| |||| ||| ||||| ||| | | ||||||||||||||||||||||||||
Sbjct 235249 TGCTCTTAACTGCGTGCCTCGGGGTGCCGGAGCGTTTACTTTGAAAAAATTAGAGTGTTC 235190
Query 100 AAAGCAGGCCTTT-GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158
||||||| ||| || | ||| |||||||||||| ||||||||| | |||||||
Sbjct 235189 AAAGCAGACCTGGCGCCTGGATAGTGGTGCATGGAATAATGGAATAGGACCT-CGGTTCT 235131
Query 159 ATTTTGTTGGTTTCTAGGACCGCC--GTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216
|||| |||||||| | ||| || |||||||| || ||||| | |||||| | ||
Sbjct 235130 ATTTCGTTGGTTT-TCGGAACGTGAGGTAATGATCAAGAGGGACGGACGGGGGCATTCGT 235072
Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276
||| | ||||||||||||||||||| ||||| ||| ||||||||||| ||
Sbjct 235071 ATTGCGGCGGGAGAGGTGAAATTCTTGGATCGCCGCAAGACGAACCACTGCGAAAGCATT 235012
Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAA 309
||||| ||||||||||| |||| |||||||
Sbjct 235011 TGCCAAGAATGTTTTCATTGATCA-AGAACGAA 234980
>seq1136
Length=385506
Score = 150 bits (166), Expect = 3e-34
Identities = 174/229 (76%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 87 AATTAGAGTGTTCAAAGCAGGCCTTT-GCTCGAATACATTAGCATGGAATAATAGAATAG 145
|||||||||||||||||||||||| || |||| |||||||||||| ||||||
Sbjct 138822 AATTAGAGTGTTCAAAGCAGGCCTGGCGCCTGAATTGTGGTGCATGGAATAATGGAATAG 138763
Query 146 GACGTGCGGTTCTATTTTGTTGGTTTCTAGGACC-GCCGTAATGATTAATAGGGATAGTC 204
||| | ||||||||||| |||||| | | | || | |||||||| || ||||| | |
Sbjct 138762 GACCT-CGGTTCTATTTAGTTGGTCTTTGGAACGTGAGGTAATGATCAAGAGGGACGGAC 138704
Query 205 GGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTAC 264
||||| | ||||| | ||| ||||||||||||||| ||||| ||| ||
Sbjct 138703 GGGGGCATTCGTATTGCGGCGGGAGAAGTGAAATTCTTGGATCGCCGCAAGACGAACCAC 138644
Query 265 TGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313
||||||||| || ||||| ||||||||||| |||| |||||||||||
Sbjct 138643 TGCGAAAGCATTTGCCAAGAATGTTTTCATTGATCA-AGAACGAAAGTT 138596
>seq2267
Length=7476
Score = 98.7 bits (108), Expect = 2e-18
Identities = 99/126 (79%), Gaps = 2/126 (2%)
Strand=Plus/Minus
Query 45 TTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGC 104
|| |||| ||| | ||| ||| | | |||||||||||||||||||||||||||||||
Sbjct 2107 TTAACTGAGTGCCTCAGGGTGCCGGAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGC 2048
Query 105 AGGCCT-TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTT 163
|||||| || | ||| | |||||| |||| ||||||||| | |||||||||||
Sbjct 2047 AGGCCTGGCGCCTGGATAGTGTTTCATGGATTAATGGAATAGGACCT-CGGTTCTATTTC 1989
Query 164 GTTGGT 169
||||||
Sbjct 1988 GTTGGT 1983
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915178877184
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |