Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq744 235 1e-59 seq1258 196 9e-48 seq2053 194 3e-47 seq746 194 3e-47 seq213 183 6e-44 seq1136 150 3e-34 seq2267 98.7 2e-18 >seq744 Length=2546 Score = 235 bits (260), Expect = 1e-59 Identities = 245/316 (78%), Gaps = 8/316 (3%) Strand=Plus/Minus Query 9 CCGGCCGGGCCTTTCCTTCTG---GGGATCCGCA--TGCCCTTCACTGGGTGTGCCGGGG 63 |||| ||| | | ||||||| | ||| ||| || |||| ||||| | | || | Sbjct 1738 CCGGTCGGCTCGTCCCTTCTGCCGGCGATGCGCTCCTGGCCTTAACTGGCCGGGTCGTGC 1679 Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATAC 122 || | || |||||||||| ||||||||||| |||||||| |||| |||| | |||| Sbjct 1678 CTCCGGCGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATAC 1619 Query 123 ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC 182 |||||||||| |||| |||||| | || | |||||||||||| | ||| || Sbjct 1618 ATTAGCATGGGATAACGTCATAGGATTT-CGATCCTATTTTGTTGGCCTTCGGGATCGGA 1560 Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||||| ||||| ||||||||| | ||||| || |||||||||||||||||| Sbjct 1559 GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 1500 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 |||||||| ||||| ||| ||||||||||| || |||||||||||||||||||||| Sbjct 1499 GGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-A 1441 Query 303 GAACGAAAGTTAGGGG 318 ||||||||||| |||| Sbjct 1440 GAACGAAAGTTGGGGG 1425 >seq1258 Length=356075 Score = 196 bits (216), Expect = 9e-48 Identities = 212/276 (77%), Gaps = 4/276 (1%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| |||| ||| ||||| ||| | | |||||||||||||||||||||||||| Sbjct 2196 TGCTCTTAACTGAGTGCCTCGGGGTGCCGGAGCGTTTACTTTGAAAAAATTAGAGTGTTC 2137 Query 100 AAAGCAGGCCTTT-GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158 ||||||||||| || ||||| |||||||||||| ||||||||| | ||||||| Sbjct 2136 AAAGCAGGCCTGGCGCCTGAATAGTGGTGCATGGAATAATGGAATAGGACCT-CGGTTCT 2078 Query 159 ATTTTGTTGGTTTCTAGGACC-GCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTA 217 |||| |||||||| | || | |||||||| || ||||| | |||||| | ||| Sbjct 2077 ATTTCGTTGGTTTTCTGAACGTGAGGTAATGATCAAGAGGGACGGACGGGGGCATTCGTA 2018 Query 218 TTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTC 277 || | ||||||||||||||||||| ||||| ||| ||||||||||| || Sbjct 2017 TTGCGGCGGGAGAGGTGAAATTCTTGGATCGCCGCAAGACGAACCACTGCGAAAGCATTT 1958 Query 278 ACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 ||||| ||||||||||| |||| ||||||||||| Sbjct 1957 GCCAAGAATGTTTTCATTGATCA-AGAACGAAAGTT 1923 >seq2053 Length=1627121 Score = 194 bits (214), Expect = 3e-47 Identities = 213/277 (77%), Gaps = 6/277 (2%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| |||| ||| ||||| ||| | | |||||||||||||||||||||||||| Sbjct 1626742 TGCTCTTAACTGAGTGCCTCGGGGTGCCGGAGCGTTTACTTTGAAAAAATTAGAGTGTTC 1626801 Query 100 AAAGCAGGCCT-TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158 ||||||||||| || ||||| |||||||||||| ||||||||| | ||||||| Sbjct 1626802 AAAGCAGGCCTGGCGCCTGAATAGTGGTGCATGGAATAATGGAATAGGACCT-CGGTTCT 1626860 Query 159 ATTTTGTTGGTTTCTAGGACC--GCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 |||| |||||||| | ||| | | |||||||| || ||||| | |||||| | || Sbjct 1626861 ATTTCGTTGGTTT-TCGGAACGTGAGGTAATGATCAAGAGGGACGGACGGGGGCATTCGT 1626919 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| | ||||||||||||||||||| | ||| ||| ||||||||||| || Sbjct 1626920 ATTGCGGCGGGAGAGGTGAAATTCTTGGATCGCCGCAGGACGAACCACTGCGAAAGCATT 1626979 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 ||||| ||||||||||| |||| ||||||||||| Sbjct 1626980 TGCCAAGAATGTTTTCATTGATCA-AGAACGAAAGTT 1627015 >seq746 Length=572904 Score = 194 bits (214), Expect = 3e-47 Identities = 213/277 (77%), Gaps = 6/277 (2%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| |||| ||| ||||| ||| | | |||||||||||||||||||||||||| Sbjct 264572 TGCTCTTAACTGAGTGCCTCGGGGTGCCGGAGCGTTTACTTTGAAAAAATTAGAGTGTTC 264631 Query 100 AAAGCAGGCCT-TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158 ||||||||||| || ||||| |||||||||||| ||||||||| | ||||||| Sbjct 264632 AAAGCAGGCCTGGCGCCTGAATAGTGGTGCATGGAATAATGGAATAGGACCT-CGGTTCT 264690 Query 159 ATTTTGTTGGTTTCTAGGACC--GCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 |||| |||||||| | ||| | | |||||||| || ||||| | |||||| | || Sbjct 264691 ATTTCGTTGGTTT-TCGGAACGTGAGGTAATGATCAAGAGGGACGGACGGGGGCATTCGT 264749 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| | ||||||||||| ||||||| ||||| ||| ||||||||||| || Sbjct 264750 ATTGCGGCGGGAGAGGTGAAATCCTTGGATCGCCGCAAGACGAACCACTGCGAAAGCATT 264809 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 ||||| ||||||||||| |||| ||||||||||| Sbjct 264810 TGCCAAGAATGTTTTCATTGATCA-AGAACGAAAGTT 264845 >seq213 Length=1041034 Score = 183 bits (202), Expect = 6e-44 Identities = 208/273 (76%), Gaps = 6/273 (2%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| |||| ||| ||||| ||| | | |||||||||||||||||||||||||| Sbjct 235249 TGCTCTTAACTGCGTGCCTCGGGGTGCCGGAGCGTTTACTTTGAAAAAATTAGAGTGTTC 235190 Query 100 AAAGCAGGCCTTT-GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158 ||||||| ||| || | ||| |||||||||||| ||||||||| | ||||||| Sbjct 235189 AAAGCAGACCTGGCGCCTGGATAGTGGTGCATGGAATAATGGAATAGGACCT-CGGTTCT 235131 Query 159 ATTTTGTTGGTTTCTAGGACCGCC--GTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 |||| |||||||| | ||| || |||||||| || ||||| | |||||| | || Sbjct 235130 ATTTCGTTGGTTT-TCGGAACGTGAGGTAATGATCAAGAGGGACGGACGGGGGCATTCGT 235072 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| | ||||||||||||||||||| ||||| ||| ||||||||||| || Sbjct 235071 ATTGCGGCGGGAGAGGTGAAATTCTTGGATCGCCGCAAGACGAACCACTGCGAAAGCATT 235012 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 ||||| ||||||||||| |||| ||||||| Sbjct 235011 TGCCAAGAATGTTTTCATTGATCA-AGAACGAA 234980 >seq1136 Length=385506 Score = 150 bits (166), Expect = 3e-34 Identities = 174/229 (76%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 87 AATTAGAGTGTTCAAAGCAGGCCTTT-GCTCGAATACATTAGCATGGAATAATAGAATAG 145 |||||||||||||||||||||||| || |||| |||||||||||| |||||| Sbjct 138822 AATTAGAGTGTTCAAAGCAGGCCTGGCGCCTGAATTGTGGTGCATGGAATAATGGAATAG 138763 Query 146 GACGTGCGGTTCTATTTTGTTGGTTTCTAGGACC-GCCGTAATGATTAATAGGGATAGTC 204 ||| | ||||||||||| |||||| | | | || | |||||||| || ||||| | | Sbjct 138762 GACCT-CGGTTCTATTTAGTTGGTCTTTGGAACGTGAGGTAATGATCAAGAGGGACGGAC 138704 Query 205 GGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTAC 264 ||||| | ||||| | ||| ||||||||||||||| ||||| ||| || Sbjct 138703 GGGGGCATTCGTATTGCGGCGGGAGAAGTGAAATTCTTGGATCGCCGCAAGACGAACCAC 138644 Query 265 TGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 ||||||||| || ||||| ||||||||||| |||| ||||||||||| Sbjct 138643 TGCGAAAGCATTTGCCAAGAATGTTTTCATTGATCA-AGAACGAAAGTT 138596 >seq2267 Length=7476 Score = 98.7 bits (108), Expect = 2e-18 Identities = 99/126 (79%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 45 TTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGC 104 || |||| ||| | ||| ||| | | ||||||||||||||||||||||||||||||| Sbjct 2107 TTAACTGAGTGCCTCAGGGTGCCGGAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGC 2048 Query 105 AGGCCT-TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTT 163 |||||| || | ||| | |||||| |||| ||||||||| | ||||||||||| Sbjct 2047 AGGCCTGGCGCCTGGATAGTGTTTCATGGATTAATGGAATAGGACCT-CGGTTCTATTTC 1989 Query 164 GTTGGT 169 |||||| Sbjct 1988 GTTGGT 1983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915178877184