Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq336 201 5e-49 seq125 179 2e-42 seq213 165 3e-38 seq1136 156 2e-35 seq1258 141 4e-31 seq1190 136 2e-29 seq1 134 6e-29 seq1474 104 1e-19 seq400 98.7 4e-18 >seq336 Length=836981 Score = 201 bits (222), Expect = 5e-49 Identities = 230/314 (73%), Gaps = 35/314 (11%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-- 462 || ||||||||| |||||||||||||||||||||| | |||||| ||||||| | Sbjct 743478 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACGCGTGCGCGAGTCATTGGGTGCCGT 743537 Query 463 ---AAACCCGTGCGCGTAATGAAAGTGAACGG---------------AGGTGGGAACCC- 503 |||||| ||| |||||| ||||| || |||||||| ||| Sbjct 743538 ACGAAACCCAGAGGCGCAATGAAGGTGAAGGGCCGTCCGTCGGTCCGAGGTGGGATCCCC 743597 Query 504 ------------GTGAGGGTGCACCATCGACCGATCCTGATGTCTTCG--GATGGATTTG 549 ||| ||| |||||| || |||||| || || || |||| | | Sbjct 743598 GCCGTCTCCGCGGTGCGGGCGCACCACCGGCCGATCTCGACCGCTCCGTCGATGAGGTCG 743657 Query 550 AGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGC 609 | ||||| | ||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 743658 CGCTAGAGCGTGCGCGTTGGGACCCGAAAGATGGTGAACTATGCCTGAGTAGGGCGAAGC 743717 Query 610 CAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTT 669 ||| |||||| ||||||||||| || |||| ||||| |||||||||||||||||||| || Sbjct 743718 CAGGGGAAACCCTGGTGGAGGCCCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACTT 743777 Query 670 GGGTATAGGGGCGA 683 |||||||||||||| Sbjct 743778 GGGTATAGGGGCGA 743791 Score = 192 bits (212), Expect = 2e-46 Identities = 228/314 (73%), Gaps = 35/314 (11%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-- 462 || ||||||||| |||||||||||||||||||||| | |||||| ||||||| | Sbjct 742829 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACGCGTGCGCGAGTCATTGGGTGCCGT 742888 Query 463 ---AAACCCGTGCGCGTAATGAAAGTGAACGG---------------AGGTGGGAACCC- 503 |||||| ||| |||||| ||||| || |||||||| ||| Sbjct 742889 ACGAAACCCAGAGGCGCAATGAAGGTGAAGGGCCGTCCGTCGGTCCGAGGTGGGATCCCC 742948 Query 504 ------------GTGAGGGTGCACCATCGACCGATCCTGATGTCTTCG--GATGGATTTG 549 | ||||| |||||| || |||||| || || || | || | | Sbjct 742949 GCCGTCTCCGCGGCGAGGGCGCACCACCGGCCGATCTCGACCGCTCCGTCGGTGAGGTCG 743008 Query 550 AGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGC 609 | ||||| | ||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 743009 CGCTAGAGCGTGCGCGTTGGGACCCGAAAGATGGTGAACTATGCCTGAGTAGGGCGAAGC 743068 Query 610 CAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTT 669 ||| |||||| ||||||||||| | |||| ||||| |||||||||||||||||||| || Sbjct 743069 CAGGGGAAACCCTGGTGGAGGCCCATAGCGATTCTGACGTGCAAATCGATCGTCAAACTT 743128 Query 670 GGGTATAGGGGCGA 683 |||||||||||||| Sbjct 743129 GGGTATAGGGGCGA 743142 Score = 104 bits (114), Expect = 1e-19 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || |||||||||| | || |||| ||||||| Sbjct 742486 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCGGGAGGTAAACTCCTCCTAAGGCTAAAT 742545 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146 | | | ||||||||||||| ||||||| |||| ||||| |||| Sbjct 742546 ACGGACACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAA 742592 >seq125 Length=1169358 Score = 179 bits (198), Expect = 2e-42 Identities = 225/314 (72%), Gaps = 35/314 (11%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-- 462 || ||||||||| |||||||||||||||||||||| | |||||| |||||||| Sbjct 151827 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACGCGTGCGCGAGTCATTGGGTGTTGT 151768 Query 463 ---AAACCCGTGCGCGTAATGAAAGTGAACGG---------------AGGTGGGAACCC- 503 |||||| ||| |||||| ||||| || |||||||| ||| Sbjct 151767 ACGAAACCCAGAGGCGCAATGAAGGTGAAGGGCCGTCCGTCGGTCCGAGGTGGGATCCCC 151708 Query 504 ------------GTGAGGGTGCACCATCGACCGATCCTGATGTCTTCG--GATGGATTTG 549 | | ||| |||||| || |||||| || || || | || | | Sbjct 151707 GCCGTCTCCGCGGCGCGGGCGCACCACCGGCCGATCTCGACCGCTCCGTCGGTGAGGTCG 151648 Query 550 AGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGC 609 | ||||| | |||||||||||||||||||||||||||||| || |||| ||||| Sbjct 151647 CGCTAGAGCGTGCGCGTTGGGACCCGAAAGATGGTGAACTATGCCCGAGCAGGGCGAAGC 151588 Query 610 CAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTT 669 ||| |||||| |||||||||| || |||| ||||| |||||||||||||||||||| || Sbjct 151587 CAGTGGAAACCCTGGTGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACTT 151528 Query 670 GGGTATAGGGGCGA 683 |||||||||||||| Sbjct 151527 GGGTATAGGGGCGA 151514 Score = 107 bits (118), Expect = 8e-21 Identities = 114/152 (75%), Gaps = 9/152 (6%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| | |||||||||||||||| | || |||||||||| | || |||| ||||||| Sbjct 152424 GAGTCGGGCTGTTTGGGAATGCAGCCCAAAGCGGGAGGTAAACTCCTCCTAAGGCTAAAT 152365 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCAC------- 152 | | | |||||||||| || ||||||| |||| ||||| ||||||| || Sbjct 152364 ACGGACACGAGACCGATAACGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTAGTAGT 152305 Query 153 --TTTGGAAAGAGAGTTAAAAAGCACGTGAAA 182 |||| | |||||||| || || | |||||| Sbjct 152304 AGTTTGAAGAGAGAGTTCAAGAGTATGTGAAA 152273 >seq213 Length=1041034 Score = 165 bits (182), Expect = 3e-38 Identities = 222/314 (71%), Gaps = 35/314 (11%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-- 462 || ||||||||| |||||||||||||||||||||| | |||||| |||||||| Sbjct 232094 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACGCGTGCGCGAGTCATTGGGTGTTGT 232035 Query 463 ---AAACCCGTGCGCGTAATGAAAGTGAACGG---------------AGGTGGGAACCC- 503 |||||| ||| |||||| ||||| || |||||||| ||| Sbjct 232034 ACGAAACCCAGAGGCGCAATGAAGGTGAAGGGCCGTCCGTCGGTCCGAGGTGGGATCCCC 231975 Query 504 ------------GTGAGGGTGCACCATCGACCGATCCTGATGTCTTCG--GATGGATTTG 549 | | ||| |||||| || |||||| || || || | || | | Sbjct 231974 GCCGTCTCCGCGGCGCGGGCGCACCACCGGCCGATCTCGACCGCTCCGTCGGTGAGGTCG 231915 Query 550 AGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGC 609 | ||||| | ||| ||||||||||||||||||||||||| || |||| ||||| Sbjct 231914 CGCTAGAGCGTGCGCGTTTTGACCCGAAAGATGGTGAACTATGCCCGAGCAGGGCGAAGC 231855 Query 610 CAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTT 669 ||| |||||| |||||||||| | |||| ||||| |||||||||||||||||||| || Sbjct 231854 CAGGGGAAACCCTGGTGGAGGTCCCTAGCGATTCTGACGTGCAAATCGATCGTCAAACTT 231795 Query 670 GGGTATAGGGGCGA 683 |||||||||||||| Sbjct 231794 GGGTATAGGGGCGA 231781 Score = 141 bits (156), Expect = 4e-31 Identities = 117/143 (82%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || |||||||||| | || |||| ||||||| Sbjct 232674 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCGGGAGGTAAACTCCTCCTAAGGCTAAAT 232615 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | | | ||||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 232614 ACGGACACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAAG 232555 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 232554 AGAGAGTTCAAGAGTACGTGAAA 232532 >seq1136 Length=385506 Score = 156 bits (172), Expect = 2e-35 Identities = 106/119 (89%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 |||||||||||||||||||||||||||||| || |||| |||||||| |||||| |||| Sbjct 150757 GTTGGGACCCGAAAGATGGTGAACTATGCCCGAGCAGGGCGAAGCCAGGGGAAACCCTGG 150698 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| || |||| ||||| |||||||||||||||||||| |||||||| ||||||| Sbjct 150697 TGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACTTGGGTATTGGGGCGA 150639 >seq1258 Length=356075 Score = 141 bits (156), Expect = 4e-31 Identities = 117/143 (82%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || |||||||||| | || |||| ||||||| Sbjct 288 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCGGGAGGTAAACTCCTCCTAAGGCTAAAT 229 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | | | ||||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 228 ACGGACACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAAG 169 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 168 AGAGAGTTCAAGAGTACGTGAAA 146 >seq1190 Length=1587 Score = 136 bits (150), Expect = 2e-29 Identities = 116/143 (81%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || || ||||||| | || |||| ||||||| Sbjct 1106 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCGGAAGGTAAACTCCTCCTAAGGCTAAAT 1165 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | | | ||||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 1166 ACGGACACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAAG 1225 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 1226 AGAGAGTTCAAGAGTACGTGAAA 1248 >seq1 Length=11880239 Score = 134 bits (148), Expect = 6e-29 Identities = 101/119 (85%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 |||||||||| ||||||||||||||||||| || |||| |||||||| |||||| |||| Sbjct 11180275 GTTGGGACCCAAAAGATGGTGAACTATGCCCGAGCAGGGCGAAGCCAGGGGAAACCCTGG 11180216 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| | | |||| ||||| |||| ||||||||||| ||| || ||||||||||||| Sbjct 11180215 TGGACGTCTGTAGCGATTCTGACGTGAAAATCGATCGTGAAAGTTAGGTATAGGGGCGA 11180157 >seq1474 Length=262060 Score = 104 bits (114), Expect = 1e-19 Identities = 77/90 (86%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 |||||||||||||| ||||||||||||||| || |||| |||||||| |||||| |||| Sbjct 158646 GTTGGGACCCGAAATATGGTGAACTATGCCCGAGCAGGGCGAAGCCAGGGGAAACCCTGG 158705 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAA 654 |||||| || |||| ||||| ||||||| Sbjct 158706 TGGAGGTCCGTAGCGATTCTGATGTGCAAA 158735 >seq400 Length=3700 Score = 98.7 bits (108), Expect = 4e-18 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 |||||||||||||||||||||| |||||| || |||||||||||| |||||| || || Sbjct 1162 TTGGGACCCGAAAGATGGTGAAATATGCCCGAGCAGGGTGAAGCCAAGGGAAACCCTAGT 1103 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCG 657 ||| ||| ||| ||||| ||||||||||| Sbjct 1102 AGAGTTCCGCTGCGATTCTGACGTGCAAATCG 1071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079950493400