Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq1258 138 5e-31 seq336 138 5e-31 seq1190 134 6e-30 seq213 125 3e-27 seq1 93.3 2e-17 >seq1258 Length=356075 Score = 138 bits (152), Expect = 5e-31 Identities = 93/102 (91%), Gaps = 4/102 (4%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| Sbjct 502 GGAAAAGAAACTAACAAGGATTCCCTCAGTAACGGCGAGTGAAGCGGGAAGAGCCCAGCG 443 Query 61 CCGAATCCCCGC-CCCGCGGTGGGGCGCGGGACATGTGGCGT 101 |||||||||||| ||| | ||||||||||| ||||||||| Sbjct 442 CCGAATCCCCGCTCCCAC---GGGGCGCGGGAAATGTGGCGT 404 >seq336 Length=836981 Score = 138 bits (152), Expect = 5e-31 Identities = 93/102 (91%), Gaps = 4/102 (4%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| Sbjct 742272 GGAAAAGAAACTAACAAGGATTCCCTCAGTAACGGCGAGTGAAGCGGGAAGAGCCCAGCG 742331 Query 61 CCGAATCCCCGC-CCCGCGGTGGGGCGCGGGACATGTGGCGT 101 |||||||||||| ||| | ||||||||||| ||||||||| Sbjct 742332 CCGAATCCCCGCTCCCAC---GGGGCGCGGGAAATGTGGCGT 742370 >seq1190 Length=1587 Score = 134 bits (148), Expect = 6e-30 Identities = 92/102 (90%), Gaps = 4/102 (4%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||| Sbjct 892 GGAAAAGAAACTAACAAGGATTCCCTAAGTAACGGCGAGTGAAGCGGGAAGAGCCCAGCG 951 Query 61 CCGAATCCCCGC-CCCGCGGTGGGGCGCGGGACATGTGGCGT 101 |||||||||||| ||| | ||||||||||| ||||||||| Sbjct 952 CCGAATCCCCGCTCCCAC---GGGGCGCGGGAAATGTGGCGT 990 >seq213 Length=1041034 Score = 125 bits (138), Expect = 3e-27 Identities = 90/102 (88%), Gaps = 4/102 (4%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| ||||||||||||||||||||||||||| || |||| ||||||| Sbjct 232888 GGAAAAGAAACTAACAAGGATTCCCTCAGTAACGGCGAGTGAAGCGGAAAGAACCCAGCG 232829 Query 61 CCGAATCCCCGC-CCCGCGGTGGGGCGCGGGACATGTGGCGT 101 |||||||||||| ||| | ||||||||||| || |||||| Sbjct 232828 CCGAATCCCCGCTCCCAC---GGGGCGCGGGAAATTTGGCGT 232790 >seq1 Length=11880239 Score = 93.3 bits (102), Expect = 2e-17 Identities = 83/103 (81%), Gaps = 6/103 (6%) Strand=Plus/Minus Query 3 AAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGA----GTGAACAGGGAAGAGCCCAG 58 ||||||||||||| || ||||||||||| ||||| | || || || |||||||||| Sbjct 11181055 AAAAGAAACTAACAAGCATTCCCTCAGTTACGGCAAATACGTTAAGCGGTAAGAGCCCAG 11180996 Query 59 CGCCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGT 101 ||||||||||||| | | ||||||||||| ||||||||| Sbjct 11180995 CGCCGAATCCCCG--CAACTACGGGGCGCGGGAAATGTGGCGT 11180955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230395014720