Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq744 291 1e-76 seq1315 217 2e-54 seq746 217 2e-54 seq1258 214 3e-53 seq1136 214 3e-53 seq336 208 1e-51 seq213 205 1e-50 >seq744 Length=2546 Score = 291 bits (322), Expect = 1e-76 Identities = 224/261 (86%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 921 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 980 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 981 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 1038 Query 120 CCACCAACCA-TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 || | | || || |||| |||||||| | ||||||||||||||| ||||| Sbjct 1039 CCGCGGAGGGGTACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 1098 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1099 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 1158 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| |||||| Sbjct 1159 AGAAAGAGCTCTCAGTCTGTC 1179 >seq1315 Length=1337 Score = 217 bits (240), Expect = 2e-54 Identities = 211/265 (80%), Gaps = 16/265 (6%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || || ||| ||||||||||||||||||| | |||||||||||||||||||| Sbjct 371 ACTCGCTGATGCCTTCATTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGA 312 Query 62 CCTGTTATTGCCTCAAACT--TCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC--C 117 ||||||||||| || | || ||| |||| ||| |||||||||||||| | Sbjct 311 CCTGTTATTGC-TCCATCTCGTCC---GGCTTACTGCCGGCTGTCCCTCTAAGAAGTTGC 256 Query 118 AGCC-ACCAACC---ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATC 173 ||| | | | || | ||| ||| |||||| | | ||||||||||||||| Sbjct 255 GGCCGATCGCGCGGGATCGCCGAA----CTAGTTAGCATGCCAGAGTCTCGTTCGTTATC 200 Query 174 GGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGA 233 || |||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 199 GGGATTAGCCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGA 140 Query 234 ATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||| |||||||||| Sbjct 139 ATCAAGAAAGAGCTCTCAATCTGTC 115 >seq746 Length=572904 Score = 217 bits (240), Expect = 2e-54 Identities = 211/265 (80%), Gaps = 16/265 (6%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || || ||| ||||||||||||||||||| | |||||||||||||||||||| Sbjct 265352 ACTCGCTGATGCCTTCAATGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGA 265293 Query 62 CCTGTTATTGCCTCAAACT--TCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC--C 117 ||||||||||| || | || ||| |||| ||| |||||||||||||| | Sbjct 265292 CCTGTTATTGC-TCCATCTCGTCC---GGCTTACTGCCGGCTGTCCCTCTAAGAAGTTGC 265237 Query 118 AGCC-ACCAACC---ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATC 173 ||| | | | || | ||| ||| |||||| | | ||||||||||||||| Sbjct 265236 GGCCGATCGCGCGGGATCGCCGAA----CTAGTTAGCATGCCAGAGTCTCGTTCGTTATC 265181 Query 174 GGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGA 233 || |||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 265180 GGGATTAGCCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGA 265121 Query 234 ATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||| |||||||||| Sbjct 265120 ATCAAGAAAGAGCTCTCAATCTGTC 265096 >seq1258 Length=356075 Score = 214 bits (236), Expect = 3e-53 Identities = 210/265 (79%), Gaps = 16/265 (6%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || || ||| ||||||||||||||||||| | |||||||||||||||||||| Sbjct 1416 ACTCGCTGATGCCTTCATTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGA 1475 Query 62 CCTGTTATTGCCTCAAACT--TCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC--C 117 ||||||||||| || | || ||| |||| ||| |||||||||||||| | Sbjct 1476 CCTGTTATTGC-TCCATCTCGTCC---GGCTTACTGCCGGCTGTCCCTCTAAGAAGTTGC 1531 Query 118 AGCC-ACCAACC---ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATC 173 ||| | | | || | ||| ||| |||||| | | |||||||||| |||| Sbjct 1532 GGCCGATCGCGCGGGATCGCCGAA----CTAGTTAGCATGCCAGAGTCTCGTTCGGTATC 1587 Query 174 GGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGA 233 || |||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 1588 GGGATTAGCCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGA 1647 Query 234 ATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||| |||||||||| Sbjct 1648 ATCAAGAAAGAGCTTTCAATCTGTC 1672 >seq1136 Length=385506 Score = 214 bits (236), Expect = 3e-53 Identities = 210/265 (79%), Gaps = 16/265 (6%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || || ||| ||||||||||||||||||| | |||||||||||||||||||| Sbjct 138089 ACTCGCTGATGCCTTCATTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGA 138148 Query 62 CCTGTTATTGCCTCAAACT--TCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC--C 117 ||||||||||| || | || ||| |||| ||| |||||||| ||||| | Sbjct 138149 CCTGTTATTGC-TCCATCTCGTCC---GGCTTACTGCCGGCTGTCCCTCTGAGAAGTTGC 138204 Query 118 AGCC-ACCAACC---ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATC 173 ||| | | | || | ||| ||| |||||| | | ||||||||||||||| Sbjct 138205 GGCCGATCGCGCGGGATCGCCGAA----CTAGTTAGCATGCCAGAGTCTCGTTCGTTATC 138260 Query 174 GGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGA 233 || |||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 138261 GGGATTAGCCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGA 138320 Query 234 ATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||| |||||||||| Sbjct 138321 ATCAAGAAAGAGCTCTCAATCTGTC 138345 >seq336 Length=836981 Score = 208 bits (230), Expect = 1e-51 Identities = 209/265 (79%), Gaps = 16/265 (6%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || || ||| ||||||||||||||||||| | |||||||||||||||||||| Sbjct 740485 ACTCGCTGATGCCTTCATTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGA 740426 Query 62 CCTGTTATTGCCTCAAACT--TCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC--C 117 ||||||||||| || | || ||| |||| ||| ||||| |||||||| | Sbjct 740425 CCTGTTATTGC-TCCATCTCGTCC---GGCTTACTGCCGGCTGTCCCCCTAAGAAGTTGC 740370 Query 118 AGCC-ACCAACC---ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATC 173 ||| | | | || | ||| ||| |||||| | | ||||||||||||||| Sbjct 740369 GGCCGATCGCGCGGGATCGCCGAA----CTAGTTAGCATGCCAGAGTCTCGTTCGTTATC 740314 Query 174 GGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGA 233 || |||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 740313 GGGATTAGCCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGA 740254 Query 234 ATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||| |||| |||||||||| Sbjct 740253 ATCAAGAAAAAGCTCTCAATCTGTC 740229 >seq213 Length=1041034 Score = 205 bits (226), Expect = 1e-50 Identities = 208/265 (78%), Gaps = 16/265 (6%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || || ||| ||||||||| ||||||||| | || ||||||||||||||||| Sbjct 234470 ACTCGCTGATGCCTTCATTGTAGCGCGGGTGCGGCCCCGGACTTCTAAGGGCATCACAGA 234529 Query 62 CCTGTTATTGCCTCAAACT--TCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC--C 117 ||||||||||| || | || ||| |||| ||| |||||||||||||| | Sbjct 234530 CCTGTTATTGC-TCCATCTCGTCC---GGCTTATTGCCGCCTGTCCCTCTAAGAAGTTGC 234585 Query 118 AGCC-ACCAACC---ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATC 173 ||| | | | || | ||| ||| |||| | | | ||||||||||||||| Sbjct 234586 GGCCGATCGCGCGGGATCGCCGAA----CTAGTTAGTATGCCAGAGTCTCGTTCGTTATC 234641 Query 174 GGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGA 233 || |||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 234642 GGGATTAGCCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGA 234701 Query 234 ATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||| |||||||||| Sbjct 234702 ATCAAGAAAGAGCTCTCAATCTGTC 234726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796782184548