Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq979 73.4 8e-11 seq937 73.4 8e-11 >seq979 Length=438673 Score = 73.4 bits (80), Expect = 8e-11 Identities = 86/115 (75%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||||||| |||| ||||||||||||||||| | || |||||||||||| ||| | Sbjct 2496 GACAGTGTCAGGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAAGAGTAACGCAGGTG 2437 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAG 226 || ||| |||||| ||| |||||| ||| || || |||||||| Sbjct 2436 TCCTAAGGCGAGCTCAGCGAGGACAGAAACCTCGCGTGGAGCAAAAGGGCAAAAG 2382 >seq937 Length=2088 Score = 73.4 bits (80), Expect = 8e-11 Identities = 86/115 (75%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||||||| |||| ||||||||||||||||| | || |||||||||||| ||| | Sbjct 1204 GACAGTGTCAGGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAAGAGTAACGCAGGTG 1145 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAG 226 || ||| |||||| ||| |||||| ||| || || |||||||| Sbjct 1144 TCCTAAGGCGAGCTCAGCGAGGACAGAAACCTCGCGTGGAGCAAAAGGGCAAAAG 1090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982377326208