Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq1315 91.5 9e-17 seq1258 91.5 9e-17 seq1136 91.5 9e-17 seq336 91.5 9e-17 seq213 91.5 9e-17 seq744 75.2 7e-12 >seq1315 Length=1337 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||| ||| ||||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 556 CTCATTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 499 Query 109 TAATACAACGCAAGCT 124 |||| ||||||| ||| Sbjct 498 TAAT-CAACGCACGCT 484 >seq1258 Length=356075 Score = 91.5 bits (100), Expect = 9e-17 Identities = 65/71 (92%), Gaps = 3/71 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 1231 CTCACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 1288 Query 109 TAATACAACGC 119 |||| |||||| Sbjct 1289 TAAT-CAACGC 1298 >seq1136 Length=385506 Score = 91.5 bits (100), Expect = 9e-17 Identities = 65/71 (92%), Gaps = 3/71 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 137904 CTCACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 137961 Query 109 TAATACAACGC 119 |||| |||||| Sbjct 137962 TAAT-CAACGC 137971 >seq336 Length=836981 Score = 91.5 bits (100), Expect = 9e-17 Identities = 65/71 (92%), Gaps = 3/71 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 740670 CTCACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 740613 Query 109 TAATACAACGC 119 |||| |||||| Sbjct 740612 TAAT-CAACGC 740603 >seq213 Length=1041034 Score = 91.5 bits (100), Expect = 9e-17 Identities = 65/71 (92%), Gaps = 3/71 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 234285 CTCACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 234342 Query 109 TAATACAACGC 119 |||| |||||| Sbjct 234343 TAAT-CAACGC 234352 >seq744 Length=2546 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 749 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 806 Query 122 GCT 124 ||| Sbjct 807 GCT 809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300793491440