Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq2053 91.5 2e-16 seq1258 91.5 2e-16 seq746 91.5 2e-16 seq213 82.4 9e-14 seq744 80.6 3e-13 seq2267 78.8 1e-12 >seq2053 Length=1627121 Score = 91.5 bits (100), Expect = 2e-16 Identities = 81/99 (82%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 |||||||| |||||| || | ||||||||| |||||||||||| ||||| |||| Sbjct 1626873 AAACCAACGAAATAGAACCG-AGGTCCTATTCCATTATTCCATGCACCACTATTCAGGCG 1626815 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 || ||||||||||||||||||||||| |||| ||||| Sbjct 1626814 CCAGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 1626776 >seq1258 Length=356075 Score = 91.5 bits (100), Expect = 2e-16 Identities = 81/99 (82%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 |||||||| |||||| || | ||||||||| |||||||||||| ||||| |||| Sbjct 2065 AAACCAACGAAATAGAACCG-AGGTCCTATTCCATTATTCCATGCACCACTATTCAGGCG 2123 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 || ||||||||||||||||||||||| |||| ||||| Sbjct 2124 CCAGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 2162 >seq746 Length=572904 Score = 91.5 bits (100), Expect = 2e-16 Identities = 81/99 (82%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 |||||||| |||||| || | ||||||||| |||||||||||| ||||| |||| Sbjct 264703 AAACCAACGAAATAGAACCG-AGGTCCTATTCCATTATTCCATGCACCACTATTCAGGCG 264645 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 || ||||||||||||||||||||||| |||| ||||| Sbjct 264644 CCAGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 264606 >seq213 Length=1041034 Score = 82.4 bits (90), Expect = 9e-14 Identities = 79/99 (80%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 |||||||| |||||| || | ||||||||| |||||||||||| ||| | |||| Sbjct 235118 AAACCAACGAAATAGAACCG-AGGTCCTATTCCATTATTCCATGCACCACTATCCAGGCG 235176 Query 70 TAAGC-CTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 || |||||||||||||||||||||| |||| ||||| Sbjct 235177 CCAGGTCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 235215 >seq744 Length=2546 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 ||||||||||||| || | |||||| |||| |||||||||||||| | | ||||| Sbjct 1574 CCAACAAAATAGGATCGAAA-TCCTATGACGTTATCCCATGCTAATGTATACAGAGCGTA 1632 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 1633 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 1670 >seq2267 Length=7476 Score = 78.8 bits (86), Expect = 1e-12 Identities = 77/97 (79%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 12 ACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCGTA 71 |||||| |||||| || | ||||||||| |||| |||||| | ||| | |||| Sbjct 1983 ACCAACGAAATAGAACCG-AGGTCCTATTCCATTAATCCATGAAACACTATCCAGGCGCC 2041 Query 72 AG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 || ||||||||||||||||||||||| |||| ||||| Sbjct 2042 AGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 2078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595186692072