Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq744 127 2e-27 seq2053 114 1e-23 seq1258 111 2e-22 seq746 109 6e-22 seq213 105 7e-21 seq2267 87.8 2e-15 seq1136 78.8 1e-12 >seq744 Length=2546 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 1670 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 1611 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| |||||| | || | ||||||||| || | ||| || ||||||| Sbjct 1610 GGGATAACGTCATAGGATTT-CGATCCTATTTTGTTGGCCTTCGGGATCGGA-GTAATGA 1553 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 1552 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 1493 Query 190 T 190 | Sbjct 1492 T 1492 >seq2053 Length=1627121 Score = 114 bits (126), Expect = 1e-23 Identities = 134/176 (76%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT-TTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| ||||||||||||||| || ||||| ||||| Sbjct 1626776 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTGGCGCCTGAATAGTGGTGCATGG 1626835 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCG-CCCGTAATGAT 130 |||||| ||||||||| | ||||||||||| || ||||| | ||| || |||||||| Sbjct 1626836 AATAATGGAATAGGACCT-CGGTTCTATTTCGTTGGTTT-TCGGAACGTGAGGTAATGAT 1626893 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 || | ||| | |||||| | ||||| | | ||||||||||||||||| Sbjct 1626894 CAAGAGGGACGGACGGGGGCATTCGTATTGCGGCGGGAGAGGTGAAATTCTTGGAT 1626949 >seq1258 Length=356075 Score = 111 bits (122), Expect = 2e-22 Identities = 131/175 (75%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT-TTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| ||||||||||||||| || ||||| ||||| Sbjct 2162 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTGGCGCCTGAATAGTGGTGCATGG 2103 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | ||||||||||| || ||||| | || |||||||| Sbjct 2102 AATAATGGAATAGGACCT-CGGTTCTATTTCGTTGGTTTTCTGAACGTGAGGTAATGATC 2044 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 || | ||| | |||||| | ||||| | | ||||||||||||||||| Sbjct 2043 AAGAGGGACGGACGGGGGCATTCGTATTGCGGCGGGAGAGGTGAAATTCTTGGAT 1989 >seq746 Length=572904 Score = 109 bits (120), Expect = 6e-22 Identities = 133/176 (76%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT-TTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| ||||||||||||||| || ||||| ||||| Sbjct 264606 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTGGCGCCTGAATAGTGGTGCATGG 264665 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCG-CCCGTAATGAT 130 |||||| ||||||||| | ||||||||||| || ||||| | ||| || |||||||| Sbjct 264666 AATAATGGAATAGGACCT-CGGTTCTATTTCGTTGGTTT-TCGGAACGTGAGGTAATGAT 264723 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 || | ||| | |||||| | ||||| | | ||||||||| ||||||| Sbjct 264724 CAAGAGGGACGGACGGGGGCATTCGTATTGCGGCGGGAGAGGTGAAATCCTTGGAT 264779 >seq213 Length=1041034 Score = 105 bits (116), Expect = 7e-21 Identities = 132/176 (75%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT-TTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| ||||||||||| ||| || | ||| ||||| Sbjct 235215 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGACCTGGCGCCTGGATAGTGGTGCATGG 235156 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCG-CCCGTAATGAT 130 |||||| ||||||||| | ||||||||||| || ||||| | ||| || |||||||| Sbjct 235155 AATAATGGAATAGGACCT-CGGTTCTATTTCGTTGGTTT-TCGGAACGTGAGGTAATGAT 235098 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 || | ||| | |||||| | ||||| | | ||||||||||||||||| Sbjct 235097 CAAGAGGGACGGACGGGGGCATTCGTATTGCGGCGGGAGAGGTGAAATTCTTGGAT 235042 >seq2267 Length=7476 Score = 87.8 bits (96), Expect = 2e-15 Identities = 79/97 (81%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT-TTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| ||||||||||||||| || | ||| | ||||| Sbjct 2078 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTGGCGCCTGGATAGTGTTTCATGG 2019 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGT 108 | |||| ||||||||| | ||||||||||| || ||| Sbjct 2018 ATTAATGGAATAGGACCT-CGGTTCTATTTCGTTGGT 1983 >seq1136 Length=385506 Score = 78.8 bits (86), Expect = 1e-12 Identities = 116/162 (72%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 26 AATTAGAGCGTTCAAAGCAGGCCT-TTGCTCGAATACATTACCATGGAATAATAGAATAG 84 |||||||| ||||||||||||||| || |||| ||||||||||| |||||| Sbjct 138822 AATTAGAGTGTTCAAAGCAGGCCTGGCGCCTGAATTGTGGTGCATGGAATAATGGAATAG 138763 Query 85 GACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGATAGTC 144 ||| | ||||||||||| || ||| | | | || |||||||| || | ||| | | Sbjct 138762 GACCT-CGGTTCTATTTAGTTGGTCTTTGGAACGTGAGGTAATGATCAAGAGGGACGGAC 138704 Query 145 GGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 ||||| | ||||| | | | ||||||||||||||| Sbjct 138703 GGGGGCATTCGTATTGCGGCGGGAGAAGTGAAATTCTTGGAT 138662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511988552320