Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq744 309 6e-82 seq1258 221 2e-55 seq1136 212 1e-52 seq336 212 1e-52 seq1315 206 5e-51 seq213 203 6e-50 seq746 132 9e-29 >seq744 Length=2546 Score = 309 bits (342), Expect = 6e-82 Identities = 261/317 (82%), Gaps = 14/317 (4%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCC------CGCTTTGGCGGGTCGCCGGCT 73 || |||||||| | |||||||| |||| | || | | | |||| || ||| Sbjct 1088 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTACCCCTCCGCGG----CCAGCT 1033 Query 74 TCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 ||||||||||||||| | ||| | ||| | ||||||||||||||||||||||||||||| Sbjct 1032 TCTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGGTCTGTGA 974 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 ||||||||||||||||||||||||||||||||||||||| | |||||||| || | Sbjct 973 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGC 914 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251 |||||||| ||| | |||||||||| | ||| | ||||| |||||||||| |||||| Sbjct 913 CTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGC 855 Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTA 311 |||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| || Sbjct 854 AATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTA 795 Query 312 CGTCCCTGCCCTTTGTA 328 ||||||||||||||||| Sbjct 794 CGTCCCTGCCCTTTGTA 778 >seq1258 Length=356075 Score = 221 bits (244), Expect = 2e-55 Identities = 206/258 (80%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTC-AAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| |||| |||||| || | | ||| |||||||||||||||| Sbjct 1527 CTTCTTAGAGGGACAGCCGGCAGTAAGCCGGACGA-GATGGAG-CAATAACAGGTCTGTG 1470 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | ||||||||||||||||||| ||| | || ||||| || Sbjct 1469 ATGCCCTTAGATGTCCGGGGCCGCACGCGCGCTACAATGAAGGCATCAGCGAGTCTTTCG 1410 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| |||| ||||| |||||| || | || | | ||||||| ||||| | | |||| Sbjct 1409 CCTTCGCCGAAAGGTGCGGGTAACCTGCTGAACCGCCTTCGTGCTAGGGATCGGGGATTG 1350 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||| ||||||||||||| |||||||||| Sbjct 1349 CAATTATTTCCCATGAACGAGGAATTCCCAGTAGATGCGTGTCATCAGCGCGCGTTGATT 1290 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 1289 ACGTCCCTGCCCTTTGTA 1272 >seq1136 Length=385506 Score = 212 bits (234), Expect = 1e-52 Identities = 204/258 (79%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTC-AAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||| |||||||| |||| |||||| || | | ||| |||||||||||||||| Sbjct 138200 CTTCTCAGAGGGACAGCCGGCAGTAAGCCGGACGA-GATGGAG-CAATAACAGGTCTGTG 138143 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | ||||||||||||||||||| ||| | || ||||| || Sbjct 138142 ATGCCCTTAGATGTCCGGGGCCGCACGCGCGCTACAATGAAGGCATCAGCGAGTCTTTCG 138083 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| |||| ||||| |||||| || | || | | ||||||| ||||| | | |||| Sbjct 138082 CCTTCGCCGAAAGGTGCGGGTAACCTGCTGAACCGCCTTCGTGCTAGGGATCGGGGATTG 138023 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||| | | | |||||||||| || |||| ||||||||||||| |||||||||| Sbjct 138022 CAATTATCTCCCATGAACGAGGAATTCCCAGTAGATGCGTGTCATCAGCGCGCGTTGATT 137963 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 137962 ACGTCCCTGCCCTTTGTA 137945 >seq336 Length=836981 Score = 212 bits (234), Expect = 1e-52 Identities = 204/258 (79%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCTC-AAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||| ||||| |||| |||||| || | | ||| |||||||||||||||| Sbjct 740374 CTTCTTAGGGGGACAGCCGGCAGTAAGCCGGACGA-GATGGAG-CAATAACAGGTCTGTG 740431 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | ||||||||||||||||||| ||| | || ||||| || Sbjct 740432 ATGCCCTTAGATGTCCGGGGCCGCACGCGCGCTACAATGAAGGCATCAGCGAGTCTTTCG 740491 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| |||| ||||| |||||| || | || | | | ||||| ||||| | | |||| Sbjct 740492 CCTTCGCCGAAAGGTGCGGGTAACCTGCTGAACCGCCTTTGTGCTAGGGATCGGGGATTG 740551 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||| | | | |||||||||| || ||||| ||||||||||||| |||||||||| Sbjct 740552 CAATTATCTCCCATGAACGAGGAATTCCCAGTAAATGCGTGTCATCAGCGCGCGTTGATT 740611 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 740612 ACGTCCCTGCCCTTTGTA 740629 >seq1315 Length=1337 Score = 206 bits (228), Expect = 5e-51 Identities = 203/258 (79%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCTC-AAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| |||| |||||| || | | ||| |||||||||||||||| Sbjct 260 CTTCTTAGAGGGACAGCCGGCAGTAAGCCGGACGA-GATGGAG-CAATAACAGGTCTGTG 317 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | ||||||||||||||||||| ||| | || ||||| || Sbjct 318 ATGCCCTTAGATGTCCGGGGCCGCACGCGCGCTACAATGAAGGCATCAGCGAGTCTTTCG 377 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| |||| ||||| |||||| || | || | | ||||||| ||||| | | |||| Sbjct 378 CCTTCGCCGAAAGGTGCGGGTAACCTGCTGAACCGCCTTCGTGCTAGGGATCGGGGATTG 437 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||| | | | ||| |||||| || |||| ||||||||||||| ||||||||| Sbjct 438 CAATTATCTCCCATGAACTAGGAATTCCCAGTAGATGCGTGTCATCAGCGTGCGTTGATT 497 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 498 ACGTCCCTGCCCTTTGTA 515 >seq213 Length=1041034 Score = 203 bits (224), Expect = 6e-50 Identities = 202/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTC-AAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| |||| |||||| || | | ||| |||||||||||||||| Sbjct 234581 CTTCTTAGAGGGACAGGCGGCAATAAGCCGGACGA-GATGGAG-CAATAACAGGTCTGTG 234524 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 ||||||||||| || | ||||||||| ||||||||| ||| | || ||||| || Sbjct 234523 ATGCCCTTAGAAGTCCGGGGCCGCACCCGCGCTACAATGAAGGCATCAGCGAGTCTTTCG 234464 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| |||| || || |||||| || | || | | ||||| | ||||| | | |||| Sbjct 234463 CCTTCGCCGAAATGTGCGGGTAACCTGCTGAACCGCCTTCGTGATAGGGATCGGGGATTG 234404 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||| | | | |||||||||| || ||||| ||||||||||||| |||||||||| Sbjct 234403 CAATTATCTCCCATGAACGAGGAATTCCCAGTAAATGCGTGTCATCAGCGCGCGTTGATT 234344 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 234343 ACGTCCCTGCCCTTTGTA 234326 >seq746 Length=572904 Score = 132 bits (146), Expect = 9e-29 Identities = 144/187 (77%), Gaps = 3/187 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCTC-AAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| |||| |||||| || | | ||| |||||||||||||||| Sbjct 265241 CTTCTTAGAGGGACAGCCGGCAGTAAGCCGGACGA-GATGGAG-CAATAACAGGTCTGTG 265298 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | ||||||||||||||||||| ||| | || ||||| || Sbjct 265299 ATGCCCTTAGATGTCCGGGGCCGCACGCGCGCTACATTGAAGGCATCAGCGAGTCTTTCG 265358 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| |||| ||||| |||||| || | || | | ||||| ||||||| | |||| Sbjct 265359 CCTTCGCCGAAAGGTGCGGGTAACCTGCTGAACCGCCTTCGTGATGGGGATCGGAGATTG 265418 Query 251 CAATTAT 257 ||||||| Sbjct 265419 CAATTAT 265425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947178138624