Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1531 248 7e-61 seq1648 170 2e-37 seq2197 95.1 1e-14 seq1787 86.0 5e-12 >seq1531 Length=8964412 Score = 248 bits (274), Expect = 7e-61 Identities = 601/895 (67%), Gaps = 15/895 (2%) Strand=Plus/Plus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 |||| |||||| | || ||||| | ||| ||||| | || || || || | | | Sbjct 402626 ATGAGCCCCTACTACAGGAGAACTCCAATCGCTTCGTCATCTTTCCTATACAGAACCACG 402685 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATT 61144 | || ||| ||||||||| ||||| | || || |||||||| |||||| || || Sbjct 402686 ACATCTGGTTCATGTACAAGAAGGCCGTGGCGTCATTCTGGACAACGGAGGAAGTAGACA 402745 Query 61145 TGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAAC 61204 | || ||| || | | ||| | || | | | ||| |||| ||||| || Sbjct 402746 TAGGTAAGGACTTGGACCATTGGAGGAGTCTCACTGACAACGAAAAACACTTCATCAAGT 402805 Query 61205 ATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTT 61264 | | ||||| |||||||| ||| || |||||||||| ||||||| | | || | | Sbjct 402806 ACATTTTGGCATTCTTTGCAGCTAGTGATGGTATCGTCAGTGAGAATCTGGTAGAGAGAT 402865 Query 61265 TCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGG 61324 || | ||||||||| || | ||||| | || ||||| ||||||||||||||||| | Sbjct 402866 TCTACAAAGAGGTGCAATTGACCGAGGCCAGGTGCTTCTATGGCTTCCAGATTGCCATTG 402925 Query 61325 AGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGG 61384 |||| |||| || || ||||||||| | | ||||| || ||||| ||| | | | Sbjct 402926 AGAACATCCATTCTGAAATGTACAGTCTCTTGATCGACACCTACATTGAGGATCCGCATG 402985 Query 61385 AACGTGAACG-AT-TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGA 61442 | | || | || |||| ||||| |||||||| | ||| || ||| ||| || || Sbjct 402986 A--GAAAAAGCATCTGTTTAATGCAATCGAGACCACACCTTGTGTAAAGAAGAAGGCTGA 403043 Query 61443 TTGGGCCTTCAATTGGATCACCAGTACAACG-GCTACATTTGGTGAACGATTGCTGGCAT 61501 |||||| ||| ||||| || | || || || ||||| ||||| || | || | Sbjct 403044 GTGGGCCCTCAGGTGGAT-TGGAGACCTGCGAGCCACTTTTGGGGAACGTGTGGTTGCTT 403102 Query 61502 TTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGA 61561 | || | || || || | |||||| ||| || ||||| || || || |||||||||| Sbjct 403103 TCGCAGCTGTGGAAGGGATCTTTTTCTCTGGGTCCTTTGCAGCTATATTCTGGTTGAAGA 403162 Query 61562 AACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGAT-ATCACGCGACGAGGGC 61620 | | ||| | ||||| || ||||| ||| ||| ||| |||| | || | || ||||| Sbjct 403163 AGAGAGGATTGATGCCAGGGCTGACTTTCTCCAACGAGCTGATCAGCA-GAGATGAGGGG 403221 Query 61621 ATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAG 61680 ||||| ||| ||||| | || | || | || | ||||| || | || ||| Sbjct 403222 ATGCACACTGAGTTTGCCTGTCTGATGTTTA---GCCACCTGGTTAACAGGCCAAGCGAG 403278 Query 61681 GAGCGTGTGGGTGAGATTGTTCGTGAG-GCGGTAACTATCGAACAGGAATTTCTGACTGA 61739 | | | ||||| | | || || || | || || || || ||| |||| || Sbjct 403279 GCAGATATTCACCAGATT-ATAGACAGTGCCGTCAAGATTGAGCAAGAGTTTTTGACAGA 403337 Query 61740 CGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATT 61799 ||| | ||||| || || || |||||| | || ||| ||||||||||| || Sbjct 403338 CGCCCTTCCCGTGAAGCTGATTGGGATGAATCAAGACCTGATGAAACAGTATATTGAGTT 403397 Query 61800 TGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGC-GGATCTATAATACGAAAAACC 61858 ||| || || | |||||| || || | | || ||| ||| || || || |||||| Sbjct 403398 TGTAGCAGATAGATTGTTGGGAGACTT-GATGTGCAGCAAGATTTACAACACTGAAAACC 403456 Query 61859 CATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAA 61913 | ||||| |||||||| | || || ||||| ||||||| || || || ||||| Sbjct 403457 CCTTTGACTTCATGGAGAACATCTCCCTGGAGGGCAAGAGCAACTTCTTTGAGAA 403511 >seq1648 Length=77580 Score = 170 bits (188), Expect = 2e-37 Identities = 249/352 (71%), Gaps = 0/352 (0%) Strand=Plus/Minus Query 61286 CGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGT 61345 ||||||| || |||||||| || |||||||| ||||||||||| |||||||||||||||| Sbjct 8664 CGGAGGCTCGGTGTTTCTATGGGTTCCAGATCGCCATGGAGAACGTCCACTCGGAGATGT 8605 Query 61346 ACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATG 61405 |||| | || || || ||||||||| |||| | || ||| | | || ||||| | Sbjct 8604 ACAGCCTGCTGATTGACACGTACATCCGGGACCCGGGGGAGAGACAGCGGCTGTTCCGGG 8545 Query 61406 CCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCA 61465 | | ||||| | || ||| |||| ||||| ||||| | | |||||| ||| Sbjct 8544 CAGTGGAGACCCTCCCCTGTGTGCGCAGGAAGGCGGACTGGGCGCTGCAGTGGATCGCCA 8485 Query 61466 GTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTT 61525 ||| | | | || || || || || | || || || | || ||||| || || | Sbjct 8484 GTAAAGACACCAGCTTCGGGGAGCGGCTGGTCGCCTTCGCTGCCGTGGAGGGAGTCTTCT 8425 Query 61526 TCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGA 61585 || || || ||||| || || || ||| | |||||||| || || ||||| || |||| Sbjct 8424 TCTCAGGGTCATTTGCTGCCATTTTCTGGCTAAAGAAACGCGGGCTGATGCCAGGCCTGA 8365 Query 61586 CCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637 ||||| ||||| | || || ||||||||| |||| ||||| || || Sbjct 8364 CCTTCTCAAATGAACTAATTAGTCGTGACGAGGGCTTGCACTGTGAGTTCGC 8313 >seq2197 Length=5472366 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109 || ||||| || || |||||||| || || || || |||||||| | ||||| || Sbjct 5039028 GTGTACTCCACGATCTCGGTGCAGAGGTTGCTACACTTGATGGTGCCGAGGTTCTGCTGG 5038969 Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169 ||| ||||| ||||| || |||||||||| |||||| || | || ||||| || Sbjct 5038968 TTAGACTTGCCGTTGCAGGCGTCCTTGTACAGCATGTAGGGGTTTCCTGTCTCTGTCTGT 5038909 Query 66170 GACTCAATGATGGCGTGCCAAA 66191 | |||||||||||||| ||||| Sbjct 5038908 GCCTCAATGATGGCGTACCAAA 5038887 >seq1787 Length=2284422 Score = 86.0 bits (94), Expect = 5e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 |||| ||||| ||| ||||| || || || || || | ||||||||| |||| | | Sbjct 1961080 ATGAGCCCCTCCTGCGTGAGAACCCCCGGCGCTTTGTCATCTTCCCCATCCAGTACCACG 1961021 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATT 61144 | || |||| |||||||| ||||| || || ||||||||||| | |||||| || || Sbjct 1961020 ACATCTGGCAGATGTACAAGAAGGCTGAGGCATCCTTCTGGACAGCGGAGGAAGTAGACC 1960961 Query 61145 TGTCCAA 61151 | ||||| Sbjct 1960960 TCTCCAA 1960954 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||||| | ||| || || ||||| || | ||||| | || |||||||||||||||| Sbjct 1960343 TGGAAAGATTCAGCCAAGAAGTGCAGGTTACAGAGGCCGGGTGCTTCTACGGCTTCCAGA 1960284 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||| ||||| ||||||| || |||||||| | | || || || ||||||| || Sbjct 1960283 TCGCCATTGAGAACATCCACTCTGAAATGTACAGCCTCTTGATAGACACCTACATCAAGG 1960224 Query 61376 A 61376 | Sbjct 1960223 A 1960223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397556816909120