Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq199 188 1e-45 seq108 188 1e-45 seq282 185 1e-44 seq126 185 1e-44 seq68 185 1e-44 seq313 179 6e-43 seq102 179 6e-43 seq278 136 6e-30 seq268 105 1e-20 seq98 95.1 2e-17 >seq199 Length=1763339 Score = 188 bits (208), Expect = 1e-45 Identities = 175/218 (80%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||| ||| |||||| ||| |||| |||||| | Sbjct 945028 GTACAAAGGGCAGGGACGTAATCAACGCGTGCT-GATGACACGCATCTACTGGGAATT-C 945085 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | | ||||||||| | ||||| | ||||| | |||| || || Sbjct 945086 CTCGTTCATGGGAGATAATTGCAATCCCCGATCCCTAGCACGAAGGCGGTTCAGCAGTTT 945145 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| ||||| |||| || ||||||| ||| | ||| ||||||||||||||| Sbjct 945146 ACCCGCACCTTTCGGCGAAGGCGAAAGACTCGCTGATGCCTTCATTGTAGCGCGCGTGCG 945205 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| | ||||||||||||||||||||||||||||||| Sbjct 945206 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 945243 >seq108 Length=2664055 Score = 188 bits (208), Expect = 1e-45 Identities = 175/218 (80%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||| ||| |||||| ||| |||| |||||| | Sbjct 1256362 GTACAAAGGGCAGGGACGTAATCAACGCGCGCT-GATGACACGCATCTACTGGGAATT-C 1256305 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | | ||||||||| | ||||| | ||||| | |||| || || Sbjct 1256304 CTCGTTCATGGGAGATAATTGCAATCCCCGATCCCTAGCACGAAGGCGGTTCAGCAGGTT 1256245 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| ||||| |||| || ||||||| ||| | ||| ||||||||||||||| Sbjct 1256244 ACCCGCACCTTTCGGCGAAGGCGAAAGACTCGCTGATGCCTTCATTGTAGCGCGCGTGCG 1256185 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| | ||||||||||||||||||||||||||||||| Sbjct 1256184 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 1256147 >seq282 Length=304269 Score = 185 bits (204), Expect = 1e-44 Identities = 174/218 (80%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||| ||| |||||| ||| |||| |||||| | Sbjct 33141 GTACAAAGGGCAGGGACGTAATCAACGCGCGCT-GATGACACGCATCTACTGGGAATT-C 33198 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | | ||||||||| | ||||| | ||||| | |||| || || Sbjct 33199 CTCGTTCATGGGAGATAATTGCAATCCCCGATCCCTAGCACGAAGGCGGTTCAGCAGGTT 33258 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| ||||| |||| || | ||||| ||| | ||| ||||||||||||||| Sbjct 33259 ACCCGCACCTTTCGGCGAAGGCGAAAAACTCGCTGATGCCTTCATTGTAGCGCGCGTGCG 33318 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| | ||||||||||||||||||||||||||||||| Sbjct 33319 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 33356 >seq126 Length=2685315 Score = 185 bits (204), Expect = 1e-44 Identities = 174/218 (80%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||| ||| |||||| ||| |||| |||||| | Sbjct 1581005 GTACAAAGGGCAGGGACGTAATCAACGCGCGCT-GATGACACGCATCTACTGGGAATT-C 1581062 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | | ||||||||| | ||||| | ||||| | |||| || || Sbjct 1581063 CTCGTTCATGGGAGATAATTGCAATCCCCGATCCCTAGCACGAAGGCGGTTCAGCAGGTT 1581122 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| ||||| |||| || | ||||| ||| | ||| ||||||||||||||| Sbjct 1581123 ACCCGCACCTTTCGGCGAAGGCGAAAAACTCGCTGATGCCTTCATTGTAGCGCGCGTGCG 1581182 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| | ||||||||||||||||||||||||||||||| Sbjct 1581183 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 1581220 >seq68 Length=339116 Score = 185 bits (204), Expect = 1e-44 Identities = 174/218 (80%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||| ||| |||||| ||| |||| |||||| | Sbjct 86354 GTACAAAGGGCAGGGACGTAATCAACGCGCGCT-GATGACACGCATCTACTGGGAATT-C 86297 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | | ||||||||| | ||||| | ||||| | |||| || || Sbjct 86296 CTCGTTCATGGGAGATAATTGCAATCCCCGATCCCTAGCACGAAGGCGGTTCAGCAGGTT 86237 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| ||||| |||| || | ||||| ||| | ||| ||||||||||||||| Sbjct 86236 ACCCGCACCTTTCGGCGAAGGCGAAAAACTCGCTGATGCCTTCATTGTAGCGCGCGTGCG 86177 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| | ||||||||||||||||||||||||||||||| Sbjct 86176 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 86139 >seq313 Length=196799 Score = 179 bits (198), Expect = 6e-43 Identities = 173/218 (79%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||| ||| |||||| ||| |||| |||||| | Sbjct 146143 GTACAAAGGGCAGGGACGTAATCAACGCGTGCT-GATGACACGCATCTACTGGGAATT-C 146086 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAA-TTTCAAAGATT 119 |||||| | | | ||||||||| | ||||| | ||||| | ||| || || Sbjct 146085 CTCGTTCATGGGAGATAATTGCAATCCCCGATCCCTAGCACGAAGGCGGTTTTGCAGGTT 146026 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| ||||| |||| || ||||||| ||| | ||| ||||||||||||||| Sbjct 146025 ACCCGCACCTTTCGGCGAAGGCGAAAGACTCGCTGATGCCTTCATTGTAGCGCGCGTGCG 145966 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| ||||||||||||||||||||||||||||||| Sbjct 145965 GCCCCAGACATCTAAGGGCATCACAGACCTGTTATTGC 145928 >seq102 Length=4412119 Score = 179 bits (198), Expect = 6e-43 Identities = 173/218 (79%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||| ||| |||||| ||| |||| |||||| | Sbjct 1738473 GTACAAAGGGCAGGGACGTAATCAACGCGTGCT-GATGACACGCATCTACTGGGAATT-C 1738416 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAA-TTTCAAAGATT 119 |||||| | | | ||||||||| | ||||| | ||||| | ||| || || Sbjct 1738415 CTCGTTCATGGGAGATAATTGCAATCCCCGATCCCTAGCACGAAGGCGGTTTTGCAGGTT 1738356 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| ||||| |||| || ||||||| ||| | ||| ||||||||||||||| Sbjct 1738355 ACCCGCACCTTTCGGCGAAGGCGAAAGACTCGCTGATGCCTTCATTGTAGCGCGCGTGCG 1738296 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| ||||||||||||||||||||||||||||||| Sbjct 1738295 GCCCCAGACATCTAAGGGCATCACAGACCTGTTATTGC 1738258 >seq278 Length=361265 Score = 136 bits (150), Expect = 6e-30 Identities = 164/218 (75%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||| ||||||| || |||||||| ||| |||||| ||| |||| ||||| | Sbjct 241250 GTACAAAGGACAGGGACTTAATCAACGCGTGCT-GATGACACGCATCTACTGGGAATA-C 241193 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | | |||| |||| | |||| ||||||| | |||| || || Sbjct 241192 CTCGTTCATGGGAATTAATTCCAATTCCCAGTCCCTATCACGAAGGCGGTTCAGCAGGTT 241133 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| ||||| |||| || | ||||| ||| | ||| ||||||| ||||| | Sbjct 241132 ACCCGCACCTTTCGGCGAAGGCGAAACACTCGCTGATGCCTTCATTGTAGCGAGCGTGTG 241073 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 | || | |||| ||||||||||||||||| || ||||| Sbjct 241072 GTCCCGGACATGTAAGGGCATCACAGACC-GTAATTGC 241036 >seq268 Length=498452 Score = 105 bits (116), Expect = 1e-20 Identities = 83/98 (85%), Gaps = 1/98 (1%) Strand=Plus/Minus Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| ||||| ||| || | ||||| ||| | ||| ||||||||||||||| Sbjct 38306 ACCCGCACCTTTCGGCGAAGC-GAAAAACTCGCTGATGCCTTCATTGTAGCGCGCGTGCG 38248 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| | ||||||||||||||||||||||||||||||| Sbjct 38247 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 38210 >seq98 Length=5292013 Score = 95.1 bits (104), Expect = 2e-17 Identities = 77/91 (85%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 127 CCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGA 186 ||| ||||| | || || | ||||| ||| | ||| ||||||||||||||||||| | Sbjct 4502177 CCTTTCGGCGA-GGCGAAA-ACTCGCTGATGCCTTCATTGTAGCGCGCGTGCGGCCCCGG 4502120 Query 187 ACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||||||||||||||||||||||||||||||| Sbjct 4502119 ACATCTAAGGGCATCACAGACCTGTTATTGC 4502089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751997100570