Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq126 208 1e-51 seq98 208 1e-51 seq68 208 1e-51 seq268 206 5e-51 seq167 185 2e-44 seq199 183 6e-44 seq232 174 3e-41 seq10 132 9e-29 >seq126 Length=2685315 Score = 208 bits (230), Expect = 1e-51 Identities = 216/277 (78%), Gaps = 6/277 (2%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| |||| |||| ||||| ||| | | |||||||||||||||||||||||||| Sbjct 1581930 TGCTCTTAACTGAGTGTCTCGGGGTGCCGGAGCGTTTACTTTGAAAAAATTAGAGTGTTC 1581871 Query 100 AAAGCAGGCCT-TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158 ||||||||||| ||| ||||| |||||||||||| ||||||||| | ||||||| Sbjct 1581870 AAAGCAGGCCTGGTGCCTGAATAGTGGTGCATGGAATAATGGAATAGGACCT-CGGTTCT 1581812 Query 159 ATTTTGTTGGTTTCTAGGACC--GCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 |||| |||||||| | ||| | | |||||||| || ||||| | |||||| | || Sbjct 1581811 ATTTCGTTGGTTT-TCGGAACGTGAGGTAATGATCAAGAGGGACGGACGGGGGCATTCGT 1581753 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| | ||||||||||||||||||| ||||| ||| ||||||||||| || Sbjct 1581752 ATTGCGGCGGGAGAGGTGAAATTCTTGGATCGCCGCAAGACGAACCACTGCGAAAGCATT 1581693 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 ||||| ||||||||||| |||| ||||||||||| Sbjct 1581692 TGCCAAGAATGTTTTCATTGATCA-AGAACGAAAGTT 1581657 >seq98 Length=5292013 Score = 208 bits (230), Expect = 1e-51 Identities = 216/277 (78%), Gaps = 6/277 (2%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| |||| |||| ||||| ||| | | |||||||||||||||||||||||||| Sbjct 4501379 TGCTCTTAACTGAGTGTCTCGGGGTGCCGGAGCGTTTACTTTGAAAAAATTAGAGTGTTC 4501438 Query 100 AAAGCAGGCCT-TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158 ||||||||||| ||| ||||| |||||||||||| ||||||||| | ||||||| Sbjct 4501439 AAAGCAGGCCTGGTGCCTGAATAGTGGTGCATGGAATAATGGAATAGGACCT-CGGTTCT 4501497 Query 159 ATTTTGTTGGTTTCTAGGACC--GCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 |||| |||||||| | ||| | | |||||||| || ||||| | |||||| | || Sbjct 4501498 ATTTCGTTGGTTT-TCGGAACGTGAGGTAATGATCAAGAGGGACGGACGGGGGCATTCGT 4501556 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| | ||||||||||||||||||| ||||| ||| ||||||||||| || Sbjct 4501557 ATTGCGGCGGGAGAGGTGAAATTCTTGGATCGCCGCAAGACGAACCACTGCGAAAGCATT 4501616 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 ||||| ||||||||||| |||| ||||||||||| Sbjct 4501617 TGCCAAGAATGTTTTCATTGATCA-AGAACGAAAGTT 4501652 >seq68 Length=339116 Score = 208 bits (230), Expect = 1e-51 Identities = 216/277 (78%), Gaps = 6/277 (2%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| |||| |||| ||||| ||| | | |||||||||||||||||||||||||| Sbjct 85429 TGCTCTTAACTGAGTGTCTCGGGGTGCCGGAGCGTTTACTTTGAAAAAATTAGAGTGTTC 85488 Query 100 AAAGCAGGCCT-TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158 ||||||||||| ||| ||||| |||||||||||| ||||||||| | ||||||| Sbjct 85489 AAAGCAGGCCTGGTGCCTGAATAGTGGTGCATGGAATAATGGAATAGGACCT-CGGTTCT 85547 Query 159 ATTTTGTTGGTTTCTAGGACC--GCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 |||| |||||||| | ||| | | |||||||| || ||||| | |||||| | || Sbjct 85548 ATTTCGTTGGTTT-TCGGAACGTGAGGTAATGATCAAGAGGGACGGACGGGGGCATTCGT 85606 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| | ||||||||||||||||||| ||||| ||| ||||||||||| || Sbjct 85607 ATTGCGGCGGGAGAGGTGAAATTCTTGGATCGCCGCAAGACGAACCACTGCGAAAGCATT 85666 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 ||||| ||||||||||| |||| ||||||||||| Sbjct 85667 TGCCAAGAATGTTTTCATTGATCA-AGAACGAAAGTT 85702 >seq268 Length=498452 Score = 206 bits (228), Expect = 5e-51 Identities = 218/278 (78%), Gaps = 8/278 (3%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| |||| |||| ||||| ||| | | |||||||||||||||||||||||||| Sbjct 32156 TGCTCTTAACTGAGTGTCTCGGGGTGCCGGAGCGTTTACTTTGAAAAAATTAGAGTGTTC 32215 Query 100 AAAGCAGGCCT-TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158 ||||||||||| ||| ||||| |||||||||||| ||||||||| | ||||||| Sbjct 32216 AAAGCAGGCCTGGTGCCTGAATAGTGGTGCATGGAATAATGGAATAGGACCT-CGGTTCT 32274 Query 159 ATTTTGTTGGTTTCTAGGACC--GCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 |||| |||||||| | ||| | | |||||||| || ||||| | |||||| | || Sbjct 32275 ATTTCGTTGGTTT-TCGGAACGTGAGGTAATGATCAAGAGGGACGGACGGGGGCATTCGT 32333 Query 217 ATT-CAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGT 275 ||| | || ||||||||||||||||||| ||||| ||| ||||||||||| | Sbjct 32334 ATTGCGGCTG-GAGAGGTGAAATTCTTGGATCGCCGCAAGACGAACCACTGCGAAAGCAT 32392 Query 276 TCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 | ||||| ||||||||||| |||| ||||||||||| Sbjct 32393 TTGCCAAGAATGTTTTCATTGATCA-AGAACGAAAGTT 32429 >seq167 Length=1689637 Score = 185 bits (204), Expect = 2e-44 Identities = 211/277 (76%), Gaps = 6/277 (2%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| |||| ||| || || ||| | |||||||||||||||||||||||||| Sbjct 43964 TGCTCTTAACTGAGTGCCTCGCGGTGCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTC 44023 Query 100 AAAGCAGGCCTTT-GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158 ||||||||||| || ||||| |||||||||||| ||||||||| | ||||||| Sbjct 44024 AAAGCAGGCCTGGCGCCTGAATAGTGGTGCATGGAATAATGGAATAGGACCT-CGGTTCT 44082 Query 159 ATTTTGTTGGTTTCTAGGACCGCC--GTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 |||| |||||||| | ||| || |||||||| || ||||| | |||||| | || Sbjct 44083 ATTTCGTTGGTTT-TCGGAACGTGAGGTAATGATCAAGAGGGACGGACGGGGGCATTCGT 44141 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| | ||||||||||||| ||||| ||||| ||| ||||||||||| || Sbjct 44142 ATTGCGGCGGGAGAGGTGAAATTCATGGATCGCCGCAAGACGAACCACTGCGAAAGCATT 44201 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 ||||| ||||||||||| |||| ||||||||||| Sbjct 44202 TGCCAAGAATGTTTTCATTGATCA-AGAACGAAAGTT 44237 >seq199 Length=1763339 Score = 183 bits (202), Expect = 6e-44 Identities = 199/258 (77%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 59 CGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT-TTGCTCG 117 ||||| ||| | | ||||||||||||||||||||||||||||||||||| | |||| | Sbjct 945934 CGGGGTGCCGGAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTTGTTGCCTG 945875 Query 118 AATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA 177 ||| |||||||||||| ||||||||| | ||||||| ||| |||||||| | ||| Sbjct 945874 AATGGTGGTGCATGGAATAATGGAATAGGACCT-CGGTTCTTTTTCGTTGGTTT-TCGGA 945817 Query 178 CCGCC--GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGA 235 || |||||||| || ||||| | |||||| | ||||| | |||||||| Sbjct 945816 ACGTGAGGTAATGATCAAGAGGGACTGACGGGGGCATTCGTATTGCGGCGGGAGAGGTGA 945757 Query 236 AATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATT 295 ||||||||||| ||||| ||| ||||||||||| || ||||| |||||||| || Sbjct 945756 AATTCTTGGATCGCCGCAAGACGAACCACTGCGAAAGCATTTGCCAAGAATGTTTTCGTT 945697 Query 296 AATCAGTGAACGAAAGTT 313 |||| ||||||||||| Sbjct 945696 GATCA-AGAACGAAAGTT 945680 >seq232 Length=1218932 Score = 174 bits (192), Expect = 3e-41 Identities = 210/278 (76%), Gaps = 7/278 (3%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| |||||||| ||| || || || | | |||||||||||||||||||||||||| Sbjct 764742 TGCTCTTCACTGAGTGCCTCGAGGTACCGGAGCGTTTACTTTGAAAAAATTAGAGTGTTC 764683 Query 100 AAAGCAGGCCTTT-GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTC- 157 ||||||||||| || |||| |||||||||||| ||||||| | | |||||| Sbjct 764682 AAAGCAGGCCTGGCGCCTGAATTGTGGTGCATGGAATAATGGAATAGGGCCT-CGGTTCC 764624 Query 158 TATTTTGTTGGTTTCTAGGACCGCC--GTAATGATTAATAGGGATAGTCGGGGGTGTCAG 215 ||||| ||||| || | ||| || |||||||| || ||||| | |||||| | | Sbjct 764623 TATTTCGTTGGGTT-TCGGAACGTGAGGTAATGATCAAGAGGGACGGACGGGGGCATTCG 764565 Query 216 TATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGT 275 |||| | ||||||||||||||||||| ||||| ||| ||||||||||| | Sbjct 764564 TATTGCGGCGGGAGAGGTGAAATTCTTGGATCGCCGCAAGACGAACCACTGCGAAAGCAT 764505 Query 276 TCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 | ||||| ||||||||||| |||| ||||||||||| Sbjct 764504 TTGCCAAGAATGTTTTCATTGATCA-AGAACGAAAGTT 764468 >seq10 Length=667919 Score = 132 bits (146), Expect = 9e-29 Identities = 203/284 (71%), Gaps = 13/284 (5%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAAT-------TAG 92 ||| ||| |||| ||| ||||| || | | ||||||||||||||| ||| Sbjct 617599 TGCTCTTAACTGAGTGCCTCGGGGTGCGGGAGCGTTTACTTTGAAAAAAAAAAAAAATAG 617540 Query 93 AGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGAATAATAGAATAGGACGTG 151 |||||| ||||||||||| | ||||| |||| ||||||| |||||| | | Sbjct 617539 AGTGTTTAAAGCAGGCCTGGCGACTGAATAGTAGTGCATAGAATAATGGAATAGATCCT- 617481 Query 152 CGGTTCTATTTTGTTGGTTTCTAGGACCGCC--GTAATGATTAATAGGGATAGTCGGGGG 209 ||||||||||| |||||||| | ||| || |||||||| || ||||| | |||||| Sbjct 617480 CGGTTCTATTTCGTTGGTTT-TCGGAACGTGAGGTAATGATCAAGAGGGACGGACGGGGG 617422 Query 210 TGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGA 269 | ||||| | ||||||||||| || || | ||||| ||| ||||||| Sbjct 617421 CATTCGTATTGCGGCGGGAGAGGTGAAATCCTCGGGTCGCCGCAAGACGAACCACTGCGA 617362 Query 270 AAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||| || ||||| || |||||||| |||| ||||||||||| Sbjct 617361 AAGCATTTGCCAAGAATTTTTTCATTGATCA-AGAACGAAAGTT 617319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915196357504