Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq268 179 2e-42 seq68 179 2e-42 seq199 174 7e-41 seq108 174 7e-41 seq282 161 4e-37 seq97 161 4e-37 seq126 141 4e-31 seq42 141 4e-31 >seq268 Length=498452 Score = 179 bits (198), Expect = 2e-42 Identities = 225/314 (72%), Gaps = 35/314 (11%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-- 462 || ||||||||| |||||||||||||||||||||| | |||||| |||||||| Sbjct 39088 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACGCGTGCGCGAGTCATTGGGTGTTGT 39147 Query 463 ---AAACCCGTGCGCGTAATGAAAGTGAACGG---------------AGGTGGGAACCC- 503 |||||| ||| |||||| ||||| || |||||||| ||| Sbjct 39148 ACGAAACCCAGAGGCGCAATGAAGGTGAAGGGCCGTCCGTCGGTCCGAGGTGGGATCCCC 39207 Query 504 ------------GTGAGGGTGCACCATCGACCGATCCTGATGTCTTCG--GATGGATTTG 549 | | ||| |||||| || |||||| || || || | || | | Sbjct 39208 GCCGTCTCCGCGGCGCGGGCGCACCACCGGCCGATCTCGACCGCTCCGTCGGTGAGGTCG 39267 Query 550 AGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGC 609 | ||||| | |||||||||||||||||||||||||||||| || |||| ||||| Sbjct 39268 CGCTAGAGCGTGCGCGTTGGGACCCGAAAGATGGTGAACTATGCCCGAGCAGGGCGAAGC 39327 Query 610 CAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTT 669 ||| |||||| |||||||||| || |||| ||||| |||||||||||||||||||| || Sbjct 39328 CAGGGGAAACCCTGGTGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACTT 39387 Query 670 GGGTATAGGGGCGA 683 |||||||||||||| Sbjct 39388 GGGTATAGGGGCGA 39401 >seq68 Length=339116 Score = 179 bits (198), Expect = 2e-42 Identities = 225/314 (72%), Gaps = 35/314 (11%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-- 462 || ||||||||| |||||||||||||||||||||| | |||||| |||||||| Sbjct 87556 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACGCGTGCGCGAGTCATTGGGTGTTGT 87615 Query 463 ---AAACCCGTGCGCGTAATGAAAGTGAACGG---------------AGGTGGGAACCC- 503 |||||| ||| |||||| ||||| || |||||||| ||| Sbjct 87616 ACGAAACCCAGAGGCGCAATGAAGGTGAAGGGCCGTCCGTCGGTCCGAGGTGGGATCCCC 87675 Query 504 ------------GTGAGGGTGCACCATCGACCGATCCTGATGTCTTCG--GATGGATTTG 549 | | ||| |||||| || |||||| || || || | || | | Sbjct 87676 GCGGTCTCCGCGGCGCGGGCGCACCACCGGCCGATCTCGACCGCTCCGTCGGTGAGGTCG 87735 Query 550 AGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGC 609 | ||||| | |||||||||||||||||||||||||||||| || |||| ||||| Sbjct 87736 CGCTAGAGCGTGCGCGTTGGGACCCGAAAGATGGTGAACTATGCCCGAGCAGGGCGAAGC 87795 Query 610 CAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTT 669 ||| |||||| |||||||||| || |||| ||||| |||||||||||||||||||| || Sbjct 87796 CAGGGGAAACCCTGGTGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACTT 87855 Query 670 GGGTATAGGGGCGA 683 |||||||||||||| Sbjct 87856 GGGTATAGGGGCGA 87869 >seq199 Length=1763339 Score = 174 bits (192), Expect = 7e-41 Identities = 224/314 (71%), Gaps = 35/314 (11%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-- 462 || ||||||||| |||||||||||||||||||||| | | |||||| |||||||| Sbjct 943299 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACGTGTGCGCGAGTCATTGGGTGTTGT 943240 Query 463 ---AAACCCGTGCGCGTAATGAAAGTGAACG---------------GAGGTGGGAACCC- 503 |||||| ||| |||||| ||||| | ||||||||| ||| Sbjct 943239 ACGAAACCCAGAGGCGCAATGAAGGTGAAGGTCCGTCCGTCGGTCCGAGGTGGGATCCCC 943180 Query 504 ------------GTGAGGGTGCACCATCGACCGATCCTGATGTCTTCG--GATGGATTTG 549 | | ||| |||||| || |||||| || || || | || | | Sbjct 943179 GCCGTCTTCGCGGCGCGGGCGCACCACCGGCCGATCTCGACCGCTCCGTCGGTGAGGTCG 943120 Query 550 AGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGC 609 | ||||| | |||||||||||| ||||||||||||||||| || ||| ||||| Sbjct 943119 CGCTAGAGCGTGCGCGTTGGGACCCGAGAGATGGTGAACTATGCCCGAGCAGGACGAAGC 943060 Query 610 CAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTT 669 ||| |||||| |||||||||| || |||| ||||| |||||||||||||||||||| || Sbjct 943059 CAGGGGAAACCCTGGTGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACTT 943000 Query 670 GGGTATAGGGGCGA 683 |||||||||||||| Sbjct 942999 GGGTATAGGGGCGA 942986 Score = 145 bits (160), Expect = 3e-32 Identities = 118/143 (83%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || |||||||||| | || |||| ||||||| Sbjct 943889 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCGGGAGGTAAACTCCTCCTAAGGCTAAAT 943830 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | | | ||||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 943829 ACGGACACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAAG 943770 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || ||||||||||| Sbjct 943769 AGAGAGTTCAATAGCACGTGAAA 943747 >seq108 Length=2664055 Score = 174 bits (192), Expect = 7e-41 Identities = 224/314 (71%), Gaps = 35/314 (11%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-- 462 || ||||||||| |||||||||||||||||||||| | |||||| |||||||| Sbjct 1258847 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACGCGTGCGCGAGTCATTGGGTGTTGT 1258906 Query 463 ---AAACCCGTGCGCGTAATGAAAGTGAACGG---------------AGGTGGGAACCC- 503 |||||| ||| |||||| ||||| || |||||||| ||| Sbjct 1258907 ACGAAACCCAGAGGCGCAATGAAGGTGAAGGGCCGTCCGTCGGTCCGAGGTGGGATCCCC 1258966 Query 504 ------------GTGAGGGTGCACCATCGACCGATCCTGATGTCTTCG--GATGGATTTG 549 | | ||| |||||| || |||||| || || || | || | | Sbjct 1258967 GCCGTCTCCGCGGCGCGGGCGCACCACCGGCCGATCTCGACCGCTCCGTCGGTGAGGTCG 1259026 Query 550 AGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGC 609 | ||||| | |||||||||||||||||||||||||||||| || |||| ||||| Sbjct 1259027 CGCTAGAGCGTGCGCGTTGGGACCCGAAAGATGGTGAACTATGCCCGAGCAGGGCGAAGC 1259086 Query 610 CAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTT 669 ||| |||||| |||||||||| || |||| ||||| ||||||||||| |||||||| || Sbjct 1259087 CAGGGGAAACCCTGGTGGAGGTCCGTAGCGATTCTGACGTGCAAATCGGTCGTCAAACTT 1259146 Query 670 GGGTATAGGGGCGA 683 |||||||||||||| Sbjct 1259147 GGGTATAGGGGCGA 1259160 Score = 136 bits (150), Expect = 2e-29 Identities = 116/143 (81%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || |||||||||| | | |||| ||||||| Sbjct 1258258 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCGGGAGGTAAACTAATCCTAAGGCTAAAT 1258317 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | | | ||||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 1258318 ACGGACACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAAG 1258377 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 1258378 AGAGAGTTCAAGAGTACGTGAAA 1258400 >seq282 Length=304269 Score = 161 bits (178), Expect = 4e-37 Identities = 107/119 (90%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 |||||||||||||||||||||||||||||| || |||| |||||||| |||||| |||| Sbjct 30751 GTTGGGACCCGAAAGATGGTGAACTATGCCCGAGCAGGGCGAAGCCAGGGGAAACCCTGG 30692 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| || |||| ||||| |||||||||||||||||||| |||||||||||||||| Sbjct 30691 TGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACTTGGGTATAGGGGCGA 30633 >seq97 Length=2734008 Score = 161 bits (178), Expect = 4e-37 Identities = 107/119 (90%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 |||||||||||||||||||||||||||||| || |||| |||||||| |||||| |||| Sbjct 2621116 GTTGGGACCCGAAAGATGGTGAACTATGCCCGAGCAGGGCGAAGCCAGGGGAAACCCTGG 2621175 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| || |||| ||||| |||||||||||||||||||| |||||||||||||||| Sbjct 2621176 TGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACTTGGGTATAGGGGCGA 2621234 >seq126 Length=2685315 Score = 141 bits (156), Expect = 4e-31 Identities = 117/143 (82%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || |||||||||| | || |||| ||||||| Sbjct 1579129 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCGGGAGGTAAACTCCTCCTAAGGCTAAAT 1579070 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | | | ||||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 1579069 ACGGACACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAAG 1579010 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 1579009 AGAGAGTTCAAGAGTACGTGAAA 1578987 >seq42 Length=7062306 Score = 141 bits (156), Expect = 4e-31 Identities = 117/143 (82%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || |||||||||| | || |||| ||||||| Sbjct 7059710 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCGGGAGGTAAACTCCTCCTAAGGCTAAAT 7059651 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | | | ||||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 7059650 ACGGACACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAAG 7059591 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 7059590 AGAGAGTTCAAGAGTACGTGAAA 7059568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079991462900