Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq282 221 2e-55 seq268 221 2e-55 seq126 221 2e-55 seq98 221 2e-55 seq68 221 2e-55 seq199 217 2e-54 seq108 217 2e-54 seq313 89.7 8e-16 seq102 89.7 8e-16 >seq282 Length=304269 Score = 221 bits (244), Expect = 2e-55 Identities = 209/262 (80%), Gaps = 10/262 (4%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || || ||| ||||||||||||||||||| | |||||||||||||||||||| Sbjct 33286 ACTCGCTGATGCCTTCATTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGA 33345 Query 62 CCTGTTATTGCCTCAAACT--TCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG 119 ||||||||||| || | || ||| |||| ||| |||||||||||||| | Sbjct 33346 CCTGTTATTGC-TCCATCTCGTCC---GGCTTACTGCCGGCTGTCCCTCTAAGAAGTT-G 33400 Query 120 CCACCAACCATAGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGA 176 | || | | | ||| | ||| |||||| | | ||||||||||||||||| Sbjct 33401 CGGCCGATCGCACGGGATCGCCGAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGG 33460 Query 177 ATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATC 236 |||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct 33461 ATTAGCCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATC 33520 Query 237 AAGAAAGAGCTATCAATCTGTC 258 ||||||||||| |||||||||| Sbjct 33521 AAGAAAGAGCTCTCAATCTGTC 33542 >seq268 Length=498452 Score = 221 bits (244), Expect = 2e-55 Identities = 209/262 (80%), Gaps = 10/262 (4%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || || ||| ||||||||||||||||||| | |||||||||||||||||||| Sbjct 38280 ACTCGCTGATGCCTTCATTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGA 38221 Query 62 CCTGTTATTGCCTCAAACT--TCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG 119 ||||||||||| || | || ||| |||| ||| |||||||||||||| | Sbjct 38220 CCTGTTATTGC-TCCATCTCGTCC---GGCTTACTGCCGGCTGTCCCTCTAAGAAGTT-G 38166 Query 120 CCACCAACCATAGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGA 176 | || | | | ||| | ||| |||||| | | ||||||||||||||||| Sbjct 38165 CGGCCGATCGCACGGGATCGCCGAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGG 38106 Query 177 ATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATC 236 |||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct 38105 ATTAGCCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATC 38046 Query 237 AAGAAAGAGCTATCAATCTGTC 258 ||||||||||| |||||||||| Sbjct 38045 AAGAAAGAGCTCTCAATCTGTC 38024 >seq126 Length=2685315 Score = 221 bits (244), Expect = 2e-55 Identities = 209/262 (80%), Gaps = 10/262 (4%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || || ||| ||||||||||||||||||| | |||||||||||||||||||| Sbjct 1581150 ACTCGCTGATGCCTTCATTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGA 1581209 Query 62 CCTGTTATTGCCTCAAACT--TCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG 119 ||||||||||| || | || ||| |||| ||| |||||||||||||| | Sbjct 1581210 CCTGTTATTGC-TCCATCTCGTCC---GGCTTACTGCCGGCTGTCCCTCTAAGAAGTT-G 1581264 Query 120 CCACCAACCATAGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGA 176 | || | | | ||| | ||| |||||| | | ||||||||||||||||| Sbjct 1581265 CGGCCGATCGCACGGGATCGCCGAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGG 1581324 Query 177 ATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATC 236 |||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct 1581325 ATTAGCCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATC 1581384 Query 237 AAGAAAGAGCTATCAATCTGTC 258 ||||||||||| |||||||||| Sbjct 1581385 AAGAAAGAGCTCTCAATCTGTC 1581406 >seq98 Length=5292013 Score = 221 bits (244), Expect = 2e-55 Identities = 209/262 (80%), Gaps = 10/262 (4%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || || ||| ||||||||||||||||||| | |||||||||||||||||||| Sbjct 4502159 ACTCGCTGATGCCTTCATTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGA 4502100 Query 62 CCTGTTATTGCCTCAAACT--TCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG 119 ||||||||||| || | || ||| |||| ||| |||||||||||||| | Sbjct 4502099 CCTGTTATTGC-TCCATCTCGTCC---GGCTTACTGCCGGCTGTCCCTCTAAGAAGTT-G 4502045 Query 120 CCACCAACCATAGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGA 176 | || | | | ||| | ||| |||||| | | ||||||||||||||||| Sbjct 4502044 CGGCCGATCGCACGGGATCGCCGAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGG 4501985 Query 177 ATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATC 236 |||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct 4501984 ATTAGCCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATC 4501925 Query 237 AAGAAAGAGCTATCAATCTGTC 258 ||||||||||| |||||||||| Sbjct 4501924 AAGAAAGAGCTCTCAATCTGTC 4501903 >seq68 Length=339116 Score = 221 bits (244), Expect = 2e-55 Identities = 209/262 (80%), Gaps = 10/262 (4%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || || ||| ||||||||||||||||||| | |||||||||||||||||||| Sbjct 86209 ACTCGCTGATGCCTTCATTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGA 86150 Query 62 CCTGTTATTGCCTCAAACT--TCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG 119 ||||||||||| || | || ||| |||| ||| |||||||||||||| | Sbjct 86149 CCTGTTATTGC-TCCATCTCGTCC---GGCTTACTGCCGGCTGTCCCTCTAAGAAGTT-G 86095 Query 120 CCACCAACCATAGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGA 176 | || | | | ||| | ||| |||||| | | ||||||||||||||||| Sbjct 86094 CGGCCGATCGCACGGGATCGCCAAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGG 86035 Query 177 ATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATC 236 |||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct 86034 ATTAGCCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATC 85975 Query 237 AAGAAAGAGCTATCAATCTGTC 258 ||||||||||| |||||||||| Sbjct 85974 AAGAAAGAGCTCTCAATCTGTC 85953 >seq199 Length=1763339 Score = 217 bits (240), Expect = 2e-54 Identities = 211/265 (80%), Gaps = 16/265 (6%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || || ||| ||||||||||||||||||| | |||||||||||||||||||| Sbjct 945173 ACTCGCTGATGCCTTCATTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGA 945232 Query 62 CCTGTTATTGCCTCAAACT--TCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC--C 117 ||||||||||| || | || ||| |||| ||| |||||||||||||| | Sbjct 945233 CCTGTTATTGC-TCCATCTCGTCC---GGCTTACTGCCGGCTGTCCCTCTAAGAAGTTGC 945288 Query 118 AGCC-ACCAACC---ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATC 173 ||| | | | || | ||| ||| |||||| | | ||||||||||||||| Sbjct 945289 GGCCGATCGCGCGGGATCGCCGAA----CTAGTTAGCATGCCAGAGTCTCGTTCGTTATC 945344 Query 174 GGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGA 233 || |||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 945345 GGGATTAGCCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGA 945404 Query 234 ATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||| |||||||||| Sbjct 945405 ATCAAGAAAGAGCTCTCAATCTGTC 945429 >seq108 Length=2664055 Score = 217 bits (240), Expect = 2e-54 Identities = 211/265 (80%), Gaps = 16/265 (6%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || || ||| ||||||||||||||||||| | |||||||||||||||||||| Sbjct 1256217 ACTCGCTGATGCCTTCATTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGA 1256158 Query 62 CCTGTTATTGCCTCAAACT--TCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC--C 117 ||||||||||| || | || ||| |||| ||| |||||||||||||| | Sbjct 1256157 CCTGTTATTGC-TCCATCTCGTCC---GGCTTACTGCCGGCTGTCCCTCTAAGAAGTTGC 1256102 Query 118 AGCC-ACCAACC---ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATC 173 ||| | | | || | ||| ||| |||||| | | ||||||||||||||| Sbjct 1256101 GGCCGATCGCGCGGGATCGCCGAA----CTAGTTAGCATGCCAGAGTCTCGTTCGTTATC 1256046 Query 174 GGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGA 233 || |||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 1256045 GGGATTAGCCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGA 1255986 Query 234 ATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||| |||||||||| Sbjct 1255985 ATCAAGAAAGAGCTCTCAATCTGTC 1255961 >seq313 Length=196799 Score = 89.7 bits (98), Expect = 8e-16 Identities = 91/116 (78%), Gaps = 6/116 (5%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || || ||| ||||||||||||||||||| |||||||||||||||||||| Sbjct 145998 ACTCGCTGATGCCTTCATTGTAGCGCGCGTGCGGCCCCAGACATCTAAGGGCATCACAGA 145939 Query 62 CCTGTTATTGCCTCAAACT--TCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 |||||||||| ||| | || ||| |||| ||| |||||||||||||| Sbjct 145938 CCTGTTATTG-CTCCATCTCGTCC---GGCTTACTGCCGGCTGTCCCTCTAAGAAG 145887 >seq102 Length=4412119 Score = 89.7 bits (98), Expect = 8e-16 Identities = 91/116 (78%), Gaps = 6/116 (5%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || || ||| ||||||||||||||||||| |||||||||||||||||||| Sbjct 1738328 ACTCGCTGATGCCTTCATTGTAGCGCGCGTGCGGCCCCAGACATCTAAGGGCATCACAGA 1738269 Query 62 CCTGTTATTGCCTCAAACT--TCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 |||||||||| ||| | || ||| |||| ||| |||||||||||||| Sbjct 1738268 CCTGTTATTG-CTCCATCTCGTCC---GGCTTACTGCCGGCTGTCCCTCTAAGAAG 1738217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796796927838