Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq199 370 2e-100 seq282 367 2e-99 seq108 361 9e-98 seq37 347 2e-93 seq97 316 3e-84 seq68 259 8e-67 seq320 219 7e-55 seq270 181 2e-43 seq227 118 2e-24 seq149 107 3e-21 >seq199 Length=1763339 Score = 370 bits (410), Expect = 2e-100 Identities = 240/263 (91%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 940697 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 940756 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 940757 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 940816 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 940817 CATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 940876 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| ||||||| || | ||| | | | | | |||||||||||||| Sbjct 940877 CTGTGGTAACTTTTCTGACACCTCTTGCTTAAAACTCCTAAAGTCAAAAGGATCGATAGG 940936 Query 271 CCACACTTTCATGGTTTGTATTC 293 |||| |||||| ||| ||||||| Sbjct 940937 CCACGCTTTCACGGTCTGTATTC 940959 >seq282 Length=304269 Score = 367 bits (406), Expect = 2e-99 Identities = 239/263 (91%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 25486 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 25545 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 25546 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 25605 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 25606 CATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 25665 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| ||||||| || | ||| | | | | |||||||||||||| Sbjct 25666 CTGTGGTAACTTTTCTGACACCTCTTGCTTAAAACTCTTAAAGTCAAAAGGATCGATAGG 25725 Query 271 CCACACTTTCATGGTTTGTATTC 293 |||| |||||| ||| ||||||| Sbjct 25726 CCACGCTTTCACGGTCTGTATTC 25748 Score = 367 bits (406), Expect = 2e-99 Identities = 239/263 (91%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 28321 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 28380 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 28381 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 28440 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 28441 CATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 28500 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| ||||||| || | ||| | | | | |||||||||||||| Sbjct 28501 CTGTGGTAACTTTTCTGACACCTCTTGCTTAAAACTCTTAAAGTCAAAAGGATCGATAGG 28560 Query 271 CCACACTTTCATGGTTTGTATTC 293 |||| |||||| ||| ||||||| Sbjct 28561 CCACGCTTTCACGGTCTGTATTC 28583 >seq108 Length=2664055 Score = 361 bits (400), Expect = 9e-98 Identities = 238/263 (90%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1261471 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 1261412 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 1261411 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 1261352 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 1261351 CATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 1261292 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| ||||||| | ||| | | | | | |||||||||||||| Sbjct 1261291 CTGTGGTAACTTTTCTGACACCTCTGCTTTAAAACTCCTAAAGTCAAAAGGATCGATAGG 1261232 Query 271 CCACACTTTCATGGTTTGTATTC 293 |||| |||||| ||| ||||||| Sbjct 1261231 CCACGCTTTCACGGTCTGTATTC 1261209 Score = 201 bits (222), Expect = 2e-49 Identities = 128/139 (92%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1237081 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 1237140 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| ||||||||||| |||||||||||| ||| Sbjct 1237141 TTAGTGGGTGAACAATCCAACGCTTGATGAATTCTGCTTTACATTGATAGGAAGAGACGA 1237200 Query 151 CATCGAAGGATCAAAAAGC 169 |||||||||| |||||||| Sbjct 1237201 CATCGAAGGAACAAAAAGC 1237219 >seq37 Length=6811162 Score = 347 bits (384), Expect = 2e-93 Identities = 234/262 (89%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct 4582842 TCATCAGTAGGGTAAATCTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 4582783 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 | ||||||||||||||||||||||| |||||||| ||| ||||||||||||||||| Sbjct 4582782 TCAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGTTTCACAATGATAGGAAGAGCCGA 4582723 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||| Sbjct 4582722 CATCGAAGGATCAAAAAGCGACGTCGCTATGAACTCTTGGCCGCCACAAGCCAGTTATCC 4582663 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| ||||||| || | ||| | | | | | |||||||||||||| Sbjct 4582662 CTGTGGTAACTTTTCTGACACCTCTTGCTTAAAACTCCTAAAGTCAAAAGGATCGATAGG 4582603 Query 271 CCACACTTTCATGGTTTGTATT 292 |||| |||||| || |||||| Sbjct 4582602 CCACGCTTTCACAGTCTGTATT 4582581 >seq97 Length=2734008 Score = 316 bits (350), Expect = 3e-84 Identities = 194/205 (95%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2614735 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 2614676 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 2614675 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 2614616 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 2614615 CATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 2614556 Query 211 CTGTGGTAACTTTTCTGGCACCTCT 235 |||||||||| |||||| ||||||| Sbjct 2614555 CTGTGGTAAC-TTTCTGACACCTCT 2614532 >seq68 Length=339116 Score = 259 bits (286), Expect = 8e-67 Identities = 178/201 (89%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct 90119 AGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACA 90060 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| Sbjct 90059 TCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCT 90000 Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCC 272 ||||||||||||||| ||||||| || | ||| | | | | |||||||||||||||| Sbjct 89999 GTGGTAACTTTTCTGACACCTCTTGCTTAAAACTCTTAAAGTCAAAAGGATCGATAGGCC 89940 Query 273 ACACTTTCATGGTTTGTATTC 293 || |||||| ||| ||||||| Sbjct 89939 ACGCTTTCACGGTCTGTATTC 89919 Score = 111 bits (122), Expect = 3e-22 Identities = 63/64 (98%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 90927 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 90868 Query 91 TTAG 94 |||| Sbjct 90867 TTAG 90864 >seq320 Length=169741 Score = 219 bits (242), Expect = 7e-55 Identities = 132/139 (95%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 169602 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 169661 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 169662 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 169721 Query 151 CATCGAAGGATCAAAAAGC 169 ||||||||||||||||||| Sbjct 169722 CATCGAAGGATCAAAAAGC 169740 >seq270 Length=492476 Score = 181 bits (200), Expect = 2e-43 Identities = 124/139 (89%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 || |||||||||||||||| | |||||| ||||||||||||||||||||||||||||| Sbjct 243903 TCTTCAGTAGGGTAAAACT---CGGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 243847 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||| |||||||||||| |||| Sbjct 243846 TTAGTGGGTGAACAATCCAACGCTTGTTGAATTCTGCTTCACAATGATAGGAAGAACCGA 243787 Query 151 CATCGAAGGATCAAAAAGC 169 ||| |||||| |||||||| Sbjct 243786 CATAGAAGGAACAAAAAGC 243768 Score = 172 bits (190), Expect = 9e-41 Identities = 122/139 (88%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 || |||||||||||||||| | |||||| ||||||||||||| | ||||||||| ||| Sbjct 230974 TCTTCAGTAGGGTAAAACT---CGGTCTCACGACGGTCTAAACCTAACTCACGTTCTCTA 231030 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 231031 TTAGTGGGTGAACAATCCAACGCTTGTTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 231090 Query 151 CATCGAAGGATCAAAAAGC 169 ||| |||||| |||||||| Sbjct 231091 CATAGAAGGAACAAAAAGC 231109 >seq227 Length=1676436 Score = 118 bits (130), Expect = 2e-24 Identities = 70/72 (97%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| Sbjct 247634 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCAC-TTCCCTA 247692 Query 91 TTAGTGGGTGAA 102 |||||||||||| Sbjct 247693 TTAGTGGGTGAA 247704 >seq149 Length=1666607 Score = 107 bits (118), Expect = 3e-21 Identities = 75/84 (89%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 76 AGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTAT 135 ||||||||||||||||||||| |||| ||||||||| || | |||||||||||| || Sbjct 1629321 AGCTCACGTTCCCTATTAGTGAGTGAGCAATCCAACAATTTC-GAATTCTGCTTCACAAT 1629379 Query 136 GATAGGAAGAGCCGACATCGAAGG 159 |||||||||||||||||||||||| Sbjct 1629380 GATAGGAAGAGCCGACATCGAAGG 1629403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854396599488