Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq108 75.2 2e-11 seq282 73.4 8e-11 seq199 73.4 8e-11 seq68 73.4 8e-11 >seq108 Length=2664055 Score = 75.2 bits (82), Expect = 2e-11 Identities = 86/115 (75%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||||||| |||| ||||||||||||||||| | || |||||||||||| ||| | Sbjct 1261069 GACAGTGTCAGGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAAGAGTAACGCAGGTG 1261128 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAG 226 || ||| |||||| ||| |||||| ||| || || |||||||| Sbjct 1261129 TCCTAAGGCGAGCTCAGCGAGGACAGAAACCTCGCGTGGAGCANAAGGGCAAAAG 1261183 >seq282 Length=304269 Score = 73.4 bits (80), Expect = 8e-11 Identities = 86/115 (75%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||||||| |||| ||||||||||||||||| | || |||||||||||| ||| | Sbjct 25888 GACAGTGTCAGGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAAGAGTAACGCAGGTG 25829 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAG 226 || ||| |||||| ||| |||||| ||| || || |||||||| Sbjct 25828 TCCTAAGGCGAGCTCAGCGAGGACAGAAACCTCGCGTGGAGCAAAAGGGCAAAAG 25774 Score = 73.4 bits (80), Expect = 8e-11 Identities = 86/115 (75%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||||||| |||| ||||||||||||||||| | || |||||||||||| ||| | Sbjct 28723 GACAGTGTCAGGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAAGAGTAACGCAGGTG 28664 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAG 226 || ||| |||||| ||| |||||| ||| || || |||||||| Sbjct 28663 TCCTAAGGCGAGCTCAGCGAGGACAGAAACCTCGCGTGGAGCAAAAGGGCAAAAG 28609 >seq199 Length=1763339 Score = 73.4 bits (80), Expect = 8e-11 Identities = 86/115 (75%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||||||| |||| ||||||||||||||||| | || |||||||||||| ||| | Sbjct 941099 GACAGTGTCAGGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAAGAGTAACGCAGGTG 941040 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAG 226 || ||| |||||| ||| |||||| ||| || || |||||||| Sbjct 941039 TCCTAAGGCGAGCTCAGCGAGGACAGAAACCTCGCGTGGAGCAAAAGGGCAAAAG 940985 >seq68 Length=339116 Score = 73.4 bits (80), Expect = 8e-11 Identities = 86/115 (75%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||||||| |||| ||||||||||||||||| | || |||||||||||| ||| | Sbjct 89779 GACAGTGTCAGGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAAGAGTAACGCAGGTG 89838 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAG 226 || ||| |||||| ||| |||||| ||| || || |||||||| Sbjct 89839 TCCTAAGGCGAGCTCAGCGAGGACAGAAACCTCGCGTGGAGCAAAAGGGCAAAAG 89893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982396090048