Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01]
398 sequences; 521,895,125 total letters
Query= AAMG01001083.1
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
seq108 75.2 2e-11
seq282 73.4 8e-11
seq199 73.4 8e-11
seq68 73.4 8e-11
>seq108
Length=2664055
Score = 75.2 bits (82), Expect = 2e-11
Identities = 86/115 (75%), Gaps = 1/115 (1%)
Strand=Plus/Plus
Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171
||||||||||| |||| ||||||||||||||||| | || |||||||||||| ||| |
Sbjct 1261069 GACAGTGTCAGGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAAGAGTAACGCAGGTG 1261128
Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAG 226
|| ||| |||||| ||| |||||| ||| || || ||||||||
Sbjct 1261129 TCCTAAGGCGAGCTCAGCGAGGACAGAAACCTCGCGTGGAGCANAAGGGCAAAAG 1261183
>seq282
Length=304269
Score = 73.4 bits (80), Expect = 8e-11
Identities = 86/115 (75%), Gaps = 1/115 (1%)
Strand=Plus/Minus
Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171
||||||||||| |||| ||||||||||||||||| | || |||||||||||| ||| |
Sbjct 25888 GACAGTGTCAGGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAAGAGTAACGCAGGTG 25829
Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAG 226
|| ||| |||||| ||| |||||| ||| || || ||||||||
Sbjct 25828 TCCTAAGGCGAGCTCAGCGAGGACAGAAACCTCGCGTGGAGCAAAAGGGCAAAAG 25774
Score = 73.4 bits (80), Expect = 8e-11
Identities = 86/115 (75%), Gaps = 1/115 (1%)
Strand=Plus/Minus
Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171
||||||||||| |||| ||||||||||||||||| | || |||||||||||| ||| |
Sbjct 28723 GACAGTGTCAGGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAAGAGTAACGCAGGTG 28664
Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAG 226
|| ||| |||||| ||| |||||| ||| || || ||||||||
Sbjct 28663 TCCTAAGGCGAGCTCAGCGAGGACAGAAACCTCGCGTGGAGCAAAAGGGCAAAAG 28609
>seq199
Length=1763339
Score = 73.4 bits (80), Expect = 8e-11
Identities = 86/115 (75%), Gaps = 1/115 (1%)
Strand=Plus/Minus
Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171
||||||||||| |||| ||||||||||||||||| | || |||||||||||| ||| |
Sbjct 941099 GACAGTGTCAGGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAAGAGTAACGCAGGTG 941040
Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAG 226
|| ||| |||||| ||| |||||| ||| || || ||||||||
Sbjct 941039 TCCTAAGGCGAGCTCAGCGAGGACAGAAACCTCGCGTGGAGCAAAAGGGCAAAAG 940985
>seq68
Length=339116
Score = 73.4 bits (80), Expect = 8e-11
Identities = 86/115 (75%), Gaps = 1/115 (1%)
Strand=Plus/Plus
Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171
||||||||||| |||| ||||||||||||||||| | || |||||||||||| ||| |
Sbjct 89779 GACAGTGTCAGGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAAGAGTAACGCAGGTG 89838
Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAG 226
|| ||| |||||| ||| |||||| ||| || || ||||||||
Sbjct 89839 TCCTAAGGCGAGCTCAGCGAGGACAGAAACCTCGCGTGGAGCAAAAGGGCAAAAG 89893
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 982396090048
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |