Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq282 91.5 9e-17 seq126 91.5 9e-17 seq108 91.5 9e-17 seq68 91.5 9e-17 seq199 86.0 4e-15 seq278 77.0 2e-12 >seq282 Length=304269 Score = 91.5 bits (100), Expect = 9e-17 Identities = 65/71 (92%), Gaps = 3/71 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 33101 CTCACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 33158 Query 109 TAATACAACGC 119 |||| |||||| Sbjct 33159 TAAT-CAACGC 33168 >seq126 Length=2685315 Score = 91.5 bits (100), Expect = 9e-17 Identities = 65/71 (92%), Gaps = 3/71 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 1580965 CTCACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 1581022 Query 109 TAATACAACGC 119 |||| |||||| Sbjct 1581023 TAAT-CAACGC 1581032 >seq108 Length=2664055 Score = 91.5 bits (100), Expect = 9e-17 Identities = 65/71 (92%), Gaps = 3/71 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 1256402 CTCACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 1256345 Query 109 TAATACAACGC 119 |||| |||||| Sbjct 1256344 TAAT-CAACGC 1256335 >seq68 Length=339116 Score = 91.5 bits (100), Expect = 9e-17 Identities = 65/71 (92%), Gaps = 3/71 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 86394 CTCACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 86337 Query 109 TAATACAACGC 119 |||| |||||| Sbjct 86336 TAAT-CAACGC 86327 >seq199 Length=1763339 Score = 86.0 bits (94), Expect = 4e-15 Identities = 64/71 (90%), Gaps = 3/71 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || ||||| ||| ||||||||||| |||||||||||||||||||| Sbjct 944988 CTCACTAAACCATT-CAATCGGTTGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 945045 Query 109 TAATACAACGC 119 |||| |||||| Sbjct 945046 TAAT-CAACGC 945055 >seq278 Length=361265 Score = 77.0 bits (84), Expect = 2e-12 Identities = 62/71 (87%), Gaps = 3/71 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 ||||| || ||||| || |||||||||| |||||||||| ||||||||||| ||||||| Sbjct 241290 CTCACAAAACCATT-CAATCGGTAGTAA-CGACGGGCGGTGTGTACAAAGGACAGGGACT 241233 Query 109 TAATACAACGC 119 |||| |||||| Sbjct 241232 TAAT-CAACGC 241223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300798877640