Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq167 91.5 2e-16 seq232 87.8 2e-15 seq268 86.0 7e-15 seq126 86.0 7e-15 seq98 86.0 7e-15 seq68 86.0 7e-15 seq199 82.4 9e-14 >seq167 Length=1689637 Score = 91.5 bits (100), Expect = 2e-16 Identities = 81/99 (82%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 |||||||| |||||| || | ||||||||| |||||||||||| ||||| |||| Sbjct 44095 AAACCAACGAAATAGAACCG-AGGTCCTATTCCATTATTCCATGCACCACTATTCAGGCG 44037 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 || ||||||||||||||||||||||| |||| ||||| Sbjct 44036 CCAGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 43998 >seq232 Length=1218932 Score = 87.8 bits (96), Expect = 2e-15 Identities = 88/113 (78%), Gaps = 1/113 (1%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 || ||||| ||||||| || | | ||||||| |||||||||||| |||| |||| Sbjct 764610 AACCCAACGAAATAGGAACCGAGGCCCTATTCCATTATTCCATGCACCACAATTCAGGCG 764669 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTC 121 || ||||||||||||||||||||||| |||| ||||| | | ||| |||| Sbjct 764670 CCAGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTCCGGTACCTC 764722 >seq268 Length=498452 Score = 86.0 bits (94), Expect = 7e-15 Identities = 80/99 (81%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 |||||||| |||||| || | ||||||||| |||||||||||| ||||| ||| Sbjct 32287 AAACCAACGAAATAGAACCG-AGGTCCTATTCCATTATTCCATGCACCACTATTCAGGCA 32229 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 || ||||||||||||||||||||||| |||| ||||| Sbjct 32228 CCAGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 32190 >seq126 Length=2685315 Score = 86.0 bits (94), Expect = 7e-15 Identities = 80/99 (81%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 |||||||| |||||| || | ||||||||| |||||||||||| ||||| ||| Sbjct 1581799 AAACCAACGAAATAGAACCG-AGGTCCTATTCCATTATTCCATGCACCACTATTCAGGCA 1581857 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 || ||||||||||||||||||||||| |||| ||||| Sbjct 1581858 CCAGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 1581896 >seq98 Length=5292013 Score = 86.0 bits (94), Expect = 7e-15 Identities = 80/99 (81%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 |||||||| |||||| || | ||||||||| |||||||||||| ||||| ||| Sbjct 4501510 AAACCAACGAAATAGAACCG-AGGTCCTATTCCATTATTCCATGCACCACTATTCAGGCA 4501452 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 || ||||||||||||||||||||||| |||| ||||| Sbjct 4501451 CCAGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 4501413 >seq68 Length=339116 Score = 86.0 bits (94), Expect = 7e-15 Identities = 80/99 (81%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 |||||||| |||||| || | ||||||||| |||||||||||| ||||| ||| Sbjct 85560 AAACCAACGAAATAGAACCG-AGGTCCTATTCCATTATTCCATGCACCACTATTCAGGCA 85502 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 || ||||||||||||||||||||||| |||| ||||| Sbjct 85501 CCAGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 85463 >seq199 Length=1763339 Score = 82.4 bits (90), Expect = 9e-14 Identities = 79/99 (80%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 |||||||| ||| || || | ||||||||| |||||||||||| |||| ||| Sbjct 945822 AAACCAACGAAAAAGAACCG-AGGTCCTATTCCATTATTCCATGCACCACCATTCAGGCA 945880 Query 70 T-AAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 |||||||||||||||||||||||||| |||| ||||| Sbjct 945881 ACAAGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 945919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595197705132