Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq268 118 1e-24 seq126 118 1e-24 seq98 118 1e-24 seq68 118 1e-24 seq199 109 6e-22 seq167 109 6e-22 seq232 95.1 1e-17 >seq268 Length=498452 Score = 118 bits (130), Expect = 1e-24 Identities = 137/177 (77%), Gaps = 6/177 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT-TTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| ||||||||||||||| ||| ||||| ||||| Sbjct 32190 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTGGTGCCTGAATAGTGGTGCATGG 32249 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCG-CCCGTAATGAT 130 |||||| ||||||||| | ||||||||||| || ||||| | ||| || |||||||| Sbjct 32250 AATAATGGAATAGGACCT-CGGTTCTATTTCGTTGGTTT-TCGGAACGTGAGGTAATGAT 32307 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATT-CAATTGTCAAAGGTGAAATTCTTGGAT 186 || | ||| | |||||| | ||||| | || | ||||||||||||||||| Sbjct 32308 CAAGAGGGACGGACGGGGGCATTCGTATTGCGGCTG-GAGAGGTGAAATTCTTGGAT 32363 >seq126 Length=2685315 Score = 118 bits (130), Expect = 1e-24 Identities = 135/176 (77%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT-TTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| ||||||||||||||| ||| ||||| ||||| Sbjct 1581896 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTGGTGCCTGAATAGTGGTGCATGG 1581837 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCG-CCCGTAATGAT 130 |||||| ||||||||| | ||||||||||| || ||||| | ||| || |||||||| Sbjct 1581836 AATAATGGAATAGGACCT-CGGTTCTATTTCGTTGGTTT-TCGGAACGTGAGGTAATGAT 1581779 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 || | ||| | |||||| | ||||| | | ||||||||||||||||| Sbjct 1581778 CAAGAGGGACGGACGGGGGCATTCGTATTGCGGCGGGAGAGGTGAAATTCTTGGAT 1581723 >seq98 Length=5292013 Score = 118 bits (130), Expect = 1e-24 Identities = 135/176 (77%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT-TTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| ||||||||||||||| ||| ||||| ||||| Sbjct 4501413 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTGGTGCCTGAATAGTGGTGCATGG 4501472 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCG-CCCGTAATGAT 130 |||||| ||||||||| | ||||||||||| || ||||| | ||| || |||||||| Sbjct 4501473 AATAATGGAATAGGACCT-CGGTTCTATTTCGTTGGTTT-TCGGAACGTGAGGTAATGAT 4501530 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 || | ||| | |||||| | ||||| | | ||||||||||||||||| Sbjct 4501531 CAAGAGGGACGGACGGGGGCATTCGTATTGCGGCGGGAGAGGTGAAATTCTTGGAT 4501586 >seq68 Length=339116 Score = 118 bits (130), Expect = 1e-24 Identities = 135/176 (77%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT-TTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| ||||||||||||||| ||| ||||| ||||| Sbjct 85463 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTGGTGCCTGAATAGTGGTGCATGG 85522 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCG-CCCGTAATGAT 130 |||||| ||||||||| | ||||||||||| || ||||| | ||| || |||||||| Sbjct 85523 AATAATGGAATAGGACCT-CGGTTCTATTTCGTTGGTTT-TCGGAACGTGAGGTAATGAT 85580 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 || | ||| | |||||| | ||||| | | ||||||||||||||||| Sbjct 85581 CAAGAGGGACGGACGGGGGCATTCGTATTGCGGCGGGAGAGGTGAAATTCTTGGAT 85636 >seq199 Length=1763339 Score = 109 bits (120), Expect = 6e-22 Identities = 133/176 (76%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT-TTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| ||||||||||||| | |||| |||| ||||| Sbjct 945919 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTTGTTGCCTGAATGGTGGTGCATGG 945860 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCG-CCCGTAATGAT 130 |||||| ||||||||| | ||||||| ||| || ||||| | ||| || |||||||| Sbjct 945859 AATAATGGAATAGGACCT-CGGTTCTTTTTCGTTGGTTT-TCGGAACGTGAGGTAATGAT 945802 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 || | ||| | |||||| | ||||| | | ||||||||||||||||| Sbjct 945801 CAAGAGGGACTGACGGGGGCATTCGTATTGCGGCGGGAGAGGTGAAATTCTTGGAT 945746 >seq167 Length=1689637 Score = 109 bits (120), Expect = 6e-22 Identities = 133/176 (76%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT-TTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| ||||||||||||||| || ||||| ||||| Sbjct 43998 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTGGCGCCTGAATAGTGGTGCATGG 44057 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCG-CCCGTAATGAT 130 |||||| ||||||||| | ||||||||||| || ||||| | ||| || |||||||| Sbjct 44058 AATAATGGAATAGGACCT-CGGTTCTATTTCGTTGGTTT-TCGGAACGTGAGGTAATGAT 44115 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 || | ||| | |||||| | ||||| | | ||||||||||| ||||| Sbjct 44116 CAAGAGGGACGGACGGGGGCATTCGTATTGCGGCGGGAGAGGTGAAATTCATGGAT 44171 >seq232 Length=1218932 Score = 95.1 bits (104), Expect = 1e-17 Identities = 131/177 (74%), Gaps = 5/177 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT-TTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| ||||||||||||||| || |||| ||||| Sbjct 764708 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTGGCGCCTGAATTGTGGTGCATGG 764649 Query 72 AATAATAGAATAGGACGTGCGGTT-CTATTTTGTAGGTTTCTAGGACCG-CCCGTAATGA 129 |||||| ||||||| | | ||||| |||||| || || || | ||| || ||||||| Sbjct 764648 AATAATGGAATAGGGCCT-CGGTTCCTATTTCGTTGGGTT-TCGGAACGTGAGGTAATGA 764591 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 | || | ||| | |||||| | ||||| | | ||||||||||||||||| Sbjct 764590 TCAAGAGGGACGGACGGGGGCATTCGTATTGCGGCGGGAGAGGTGAAATTCTTGGAT 764534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511998025920