Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq282 221 2e-55 seq199 221 2e-55 seq126 221 2e-55 seq68 221 2e-55 seq108 215 1e-53 seq313 212 1e-52 seq102 212 1e-52 seq278 154 3e-35 seq268 105 1e-20 seq98 98.7 2e-18 >seq282 Length=304269 Score = 221 bits (244), Expect = 2e-55 Identities = 206/258 (80%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTC-AAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| |||| |||||| || | | ||| |||||||||||||||| Sbjct 33397 CTTCTTAGAGGGACAGCCGGCAGTAAGCCGGACGA-GATGGAG-CAATAACAGGTCTGTG 33340 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | ||||||||||||||||||| ||| | || |||||| || Sbjct 33339 ATGCCCTTAGATGTCCGGGGCCGCACGCGCGCTACAATGAAGGCATCAGCGAGTTTTTCG 33280 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| |||| ||||| |||||| || | || | | ||||||| ||||| | | |||| Sbjct 33279 CCTTCGCCGAAAGGTGCGGGTAACCTGCTGAACCGCCTTCGTGCTAGGGATCGGGGATTG 33220 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||| | | | |||||||||| || |||| ||||||||||||| |||||||||| Sbjct 33219 CAATTATCTCCCATGAACGAGGAATTCCCAGTAGATGCGTGTCATCAGCGCGCGTTGATT 33160 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 33159 ACGTCCCTGCCCTTTGTA 33142 >seq199 Length=1763339 Score = 221 bits (244), Expect = 2e-55 Identities = 206/258 (80%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTC-AAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| |||| |||||| || | | ||| |||||||||||||||| Sbjct 945284 CTTCTTAGAGGGACAGCCGGCAGTAAGCCGGACGA-GATGGAG-CAATAACAGGTCTGTG 945227 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | ||||||||||||||||||| ||| | || ||||| || Sbjct 945226 ATGCCCTTAGATGTCCGGGGCCGCACGCGCGCTACAATGAAGGCATCAGCGAGTCTTTCG 945167 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| |||| ||||| |||||| || | || | | ||||||| ||||| | | |||| Sbjct 945166 CCTTCGCCGAAAGGTGCGGGTAAACTGCTGAACCGCCTTCGTGCTAGGGATCGGGGATTG 945107 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||| | | | |||||||||| || |||| |||||||||||||||||||||||| Sbjct 945106 CAATTATCTCCCATGAACGAGGAATTCCCAGTAGATGCGTGTCATCAGCACGCGTTGATT 945047 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 945046 ACGTCCCTGCCCTTTGTA 945029 >seq126 Length=2685315 Score = 221 bits (244), Expect = 2e-55 Identities = 206/258 (80%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTC-AAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| |||| |||||| || | | ||| |||||||||||||||| Sbjct 1581261 CTTCTTAGAGGGACAGCCGGCAGTAAGCCGGACGA-GATGGAG-CAATAACAGGTCTGTG 1581204 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | ||||||||||||||||||| ||| | || |||||| || Sbjct 1581203 ATGCCCTTAGATGTCCGGGGCCGCACGCGCGCTACAATGAAGGCATCAGCGAGTTTTTCG 1581144 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| |||| ||||| |||||| || | || | | ||||||| ||||| | | |||| Sbjct 1581143 CCTTCGCCGAAAGGTGCGGGTAACCTGCTGAACCGCCTTCGTGCTAGGGATCGGGGATTG 1581084 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||| | | | |||||||||| || |||| ||||||||||||| |||||||||| Sbjct 1581083 CAATTATCTCCCATGAACGAGGAATTCCCAGTAGATGCGTGTCATCAGCGCGCGTTGATT 1581024 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 1581023 ACGTCCCTGCCCTTTGTA 1581006 >seq68 Length=339116 Score = 221 bits (244), Expect = 2e-55 Identities = 206/258 (80%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCTC-AAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| |||| |||||| || | | ||| |||||||||||||||| Sbjct 86098 CTTCTTAGAGGGACAGCCGGCAGTAAGCCGGACGA-GATGGAG-CAATAACAGGTCTGTG 86155 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | ||||||||||||||||||| ||| | || |||||| || Sbjct 86156 ATGCCCTTAGATGTCCGGGGCCGCACGCGCGCTACAATGAAGGCATCAGCGAGTTTTTCG 86215 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| |||| ||||| |||||| || | || | | ||||||| ||||| | | |||| Sbjct 86216 CCTTCGCCGAAAGGTGCGGGTAACCTGCTGAACCGCCTTCGTGCTAGGGATCGGGGATTG 86275 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||| | | | |||||||||| || |||| ||||||||||||| |||||||||| Sbjct 86276 CAATTATCTCCCATGAACGAGGAATTCCCAGTAGATGCGTGTCATCAGCGCGCGTTGATT 86335 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 86336 ACGTCCCTGCCCTTTGTA 86353 >seq108 Length=2664055 Score = 215 bits (238), Expect = 1e-53 Identities = 205/258 (79%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCTC-AAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| |||| |||||| || | | ||| |||||||||||||||| Sbjct 1256106 CTTCTTAGAGGGACAGCCGGCAGTAAGCCGGACGA-GATGGAG-CAATAACAGGTCTGTG 1256163 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | ||||||||||||||||||| ||| | || ||||| || Sbjct 1256164 ATGCCCTTAGATGTCCGGGGCCGCACGCGCGCTACAATGAAGGCATCAGCGAGTCTTTCG 1256223 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| |||| ||||| |||||| || | || | | ||||||| ||||| | | |||| Sbjct 1256224 CCTTCGCCGAAAGGTGCGGGTAACCTGCTGAACCGCCTTCGTGCTAGGGATCGGGGATTG 1256283 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||| | | | |||||||||| || |||| ||||||||||||| |||||||||| Sbjct 1256284 CAATTATCTCCCATGAACGAGGAATTCCCAGTAGATGCGTGTCATCAGCGCGCGTTGATT 1256343 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 1256344 ACGTCCCTGCCCTTTGTA 1256361 >seq313 Length=196799 Score = 212 bits (234), Expect = 1e-52 Identities = 204/258 (79%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCTC-AAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| |||| |||||| || | | ||| |||||||||||||||| Sbjct 145887 CTTCTTAGAGGGACAGCCGGCAGTAAGCCGGACGA-GATGGAG-CAATAACAGGTCTGTG 145944 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| ||||||||||||||||||| ||| | || ||||| || Sbjct 145945 ATGCCCTTAGATGTCTGGGGCCGCACGCGCGCTACAATGAAGGCATCAGCGAGTCTTTCG 146004 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| |||| ||||| |||||| || || | | ||||||| ||||| | | |||| Sbjct 146005 CCTTCGCCGAAAGGTGCGGGTAACCTGCAAAACCGCCTTCGTGCTAGGGATCGGGGATTG 146064 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||| | | | |||||||||| || |||| |||||||||||||||||||||||| Sbjct 146065 CAATTATCTCCCATGAACGAGGAATTCCCAGTAGATGCGTGTCATCAGCACGCGTTGATT 146124 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 146125 ACGTCCCTGCCCTTTGTA 146142 >seq102 Length=4412119 Score = 212 bits (234), Expect = 1e-52 Identities = 204/258 (79%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCTC-AAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| |||| |||||| || | | ||| |||||||||||||||| Sbjct 1738217 CTTCTTAGAGGGACAGCCGGCAGTAAGCCGGACGA-GATGGAG-CAATAACAGGTCTGTG 1738274 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| ||||||||||||||||||| ||| | || ||||| || Sbjct 1738275 ATGCCCTTAGATGTCTGGGGCCGCACGCGCGCTACAATGAAGGCATCAGCGAGTCTTTCG 1738334 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| |||| ||||| |||||| || || | | ||||||| ||||| | | |||| Sbjct 1738335 CCTTCGCCGAAAGGTGCGGGTAACCTGCAAAACCGCCTTCGTGCTAGGGATCGGGGATTG 1738394 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||| | | | |||||||||| || |||| |||||||||||||||||||||||| Sbjct 1738395 CAATTATCTCCCATGAACGAGGAATTCCCAGTAGATGCGTGTCATCAGCACGCGTTGATT 1738454 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 1738455 ACGTCCCTGCCCTTTGTA 1738472 >seq278 Length=361265 Score = 154 bits (170), Expect = 3e-35 Identities = 164/215 (76%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||| || ||||||||||||||||| |||| | || || ||||| ||||||| ||| | Sbjct 241036 GCAATTAC-GGTCTGTGATGCCCTTACATGTCCGGGACCACACGCTCGCTACAATGAAGG 241094 Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233 || ||||| || |||| |||| ||||| |||||| || | || | | ||||| Sbjct 241095 CATCAGCGAGTGTTTCGCCTTCGCCGAAAGGTGCGGGTAACCTGCTGAACCGCCTTCGTG 241154 Query 234 CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTC 293 | |||| | | |||| ||||| | | | | ||||||| || || |||| ||||||| Sbjct 241155 ATAGGGACTGGGAATTGGAATTAATTCCCATGAACGAGGTATTCCCAGTAGATGCGTGTC 241214 Query 294 ATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| ||||||| |||||||| Sbjct 241215 ATCAGCACGCGTTGATTAAGTCCCTGTCCTTTGTA 241249 >seq268 Length=498452 Score = 105 bits (116), Expect = 1e-20 Identities = 111/141 (79%), Gaps = 4/141 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCTC-AAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| |||| |||||| || | | ||| |||||||||||||||| Sbjct 38169 CTTCTTAGAGGGACAGCCGGCAGTAAGCCGGACGA-GATGGAG-CAATAACAGGTCTGTG 38226 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | ||||||||||||||||||| ||| | || |||||| || Sbjct 38227 ATGCCCTTAGATGTCCGGGGCCGCACGCGCGCTACAATGAAGGCATCAGCGAGTTTTTC- 38285 Query 191 CCTTGGCCGGAAGGTCTGGGT 211 ||| |||| ||||| |||| Sbjct 38286 GCTTCGCCGAAAGGTGCGGGT 38306 >seq98 Length=5292013 Score = 98.7 bits (108), Expect = 2e-18 Identities = 84/100 (84%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCTC-AAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| |||| |||||| || | | ||| |||||||||||||||| Sbjct 4502048 CTTCTTAGAGGGACAGCCGGCAGTAAGCCGGACGA-GATGGAG-CAATAACAGGTCTGTG 4502105 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||||||||||||| | ||||||||||||||||||| ||| Sbjct 4502106 ATGCCCTTAGATGTCCGGGGCCGCACGCGCGCTACAATGA 4502145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947196230144