Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq199 609 8e-172 seq282 583 3e-164 seq108 583 3e-164 seq68 583 3e-164 seq97 327 4e-87 seq42 138 4e-30 >seq199 Length=1763339 Score = 609 bits (674), Expect = 8e-172 Identities = 464/542 (86%), Gaps = 15/542 (3%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||| || ||| ||||||| ||| |||| | ||||||||||||||||||| Sbjct 940993 CTTTTGCTCCACGCGAGGTTTCTGTCCTCGCTGAGCTCGCCTTAGGACACCTGCGTTACT 941052 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||||||| ||||||||| |||||||||| ||||||| |||| | |||||| Sbjct 941053 CTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACACTGTCTTGGGAGCGGATC 941112 Query 127 G-GCCCG--CGAAGGAC------CTTAACGCCAGAAA---ATGGTCG-GTGAAGACCAGT 173 | ||||| | | || | ||||||| || ||| | | || | | | || | Sbjct 941113 GTGCCCGGCCAACGGCCGGAGCGCTTAACGTCAAAAAGGAAAGCCCGCGAGGGGCTCACT 941172 Query 174 T-CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAA 232 | |||| ||| | |||| || ||||||| || ||||||||||||||| || | | Sbjct 941173 TTCCGCCTCACCCAATAAGCGAAGAAACGATGAGAGTAGTGGTATTTCACCGACGGCCCA 941232 Query 233 ACGGC-TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAG 291 | ||| |||||| ||| |||||||| ||| ||| |||||| |||||||||||||||||| Sbjct 941233 AGGGCCTCCCACCTATGCTACACCTTTCATGTCCCTTCACAGAGTCGGACTAGAGTCAAG 941292 Query 292 CTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTC 351 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 941293 CTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTC 941352 Query 352 GCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATT 411 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 941353 GCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATT 941412 Query 412 AGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCG 471 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 941413 AGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCG 941472 Query 472 CTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 941473 CTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 941532 Query 532 CA 533 || Sbjct 941533 CA 941534 >seq282 Length=304269 Score = 583 bits (646), Expect = 3e-164 Identities = 465/561 (83%), Gaps = 34/561 (6%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||| || ||| ||||||| ||| |||| | ||||||||||||||||||| Sbjct 25782 CTTTTGCTCCACGCGAGGTTTCTGTCCTCGCTGAGCTCGCCTTAGGACACCTGCGTTACT 25841 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC----------ATC 116 ||| |||||||| ||||||||| |||||||||| ||||||| |||| ||| Sbjct 25842 CTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACACTGTCTTGGGAACGGATC 25901 Query 117 AA-CCCGGAT-----------------CGGCCCGCGAAGGACCTTAACGCCAGAAA--AT 156 | ||||| | ||||| || | ||||||||||||| | Sbjct 25902 ACGCCCGGCTGACGACCGCGGCGAGCGCGGCCGGCCGGCGCGCTTAACGCCAGAAGGGAA 25961 Query 157 GGTCGGTGAAGACCAG---TTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTG 213 | | || | | |||||| ||| | |||||||| ||||||| || |||||| Sbjct 25962 AGCCCACGAGGGGCTCGCTTTCCGCCTCACCCAGTAAGTAAAGAAACGATGAGAGTAGTG 26021 Query 214 GTATTTCACTTGCG-CCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACA 272 ||||||||| || || || | ||||||| ||| |||||||| ||| ||| |||||| Sbjct 26022 GTATTTCACCGACGGCCCAAGAGCCTCCCACCTATGCTACACCTTTCATGTCCCTTCACA 26081 Query 273 AAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCG 332 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 26082 GAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCG 26141 Query 333 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCA 392 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 26142 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCA 26201 Query 393 TTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTA 452 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 26202 TTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTA 26261 Query 453 CTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGC 512 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 26262 CTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGC 26321 Query 513 AGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||| Sbjct 26322 AGAAATCACATTGCGTCAACA 26342 Score = 583 bits (646), Expect = 3e-164 Identities = 465/561 (83%), Gaps = 34/561 (6%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||| || ||| ||||||| ||| |||| | ||||||||||||||||||| Sbjct 28617 CTTTTGCTCCACGCGAGGTTTCTGTCCTCGCTGAGCTCGCCTTAGGACACCTGCGTTACT 28676 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC----------ATC 116 ||| |||||||| ||||||||| |||||||||| ||||||| |||| ||| Sbjct 28677 CTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACACTGTCTTGGGAACGGATC 28736 Query 117 AA-CCCGGAT-----------------CGGCCCGCGAAGGACCTTAACGCCAGAAA--AT 156 | ||||| | ||||| || | ||||||||||||| | Sbjct 28737 ACGCCCGGCTGACGACCGCGGCGAGCGCGGCCGGCCGGCGCGCTTAACGCCAGAAGGGAA 28796 Query 157 GGTCGGTGAAGACCAG---TTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTG 213 | | || | | |||||| ||| | |||||||| ||||||| || |||||| Sbjct 28797 AGCCCACGAGGGGCTCGCTTTCCGCCTCACCCAGTAAGTAAAGAAACGATGAGAGTAGTG 28856 Query 214 GTATTTCACTTGCG-CCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACA 272 ||||||||| || || || | ||||||| ||| |||||||| ||| ||| |||||| Sbjct 28857 GTATTTCACCGACGGCCCAAGAGCCTCCCACCTATGCTACACCTTTCATGTCCCTTCACA 28916 Query 273 AAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCG 332 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 28917 GAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCG 28976 Query 333 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCA 392 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 28977 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCA 29036 Query 393 TTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTA 452 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 29037 TTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTA 29096 Query 453 CTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGC 512 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 29097 CTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGC 29156 Query 513 AGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||| Sbjct 29157 AGAAATCACATTGCGTCAACA 29177 >seq108 Length=2664055 Score = 583 bits (646), Expect = 3e-164 Identities = 464/561 (83%), Gaps = 34/561 (6%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || ||| ||||||| ||| |||| | ||||||||||||||||||| Sbjct 1261175 CTTNTGCTCCACGCGAGGTTTCTGTCCTCGCTGAGCTCGCCTTAGGACACCTGCGTTACT 1261116 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||||||| ||||||||| |||||||||| ||||||| |||| | |||||| Sbjct 1261115 CTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACACTGTCTTGGGAGCGGATC 1261056 Query 127 G------------GCCCGCGAAGGAC----------------CTTAACGCCAGAAA--AT 156 | | |||||| | | ||||||||||||| | Sbjct 1261055 GCGCCCGGCTGACGACCGCGACGAGCGCGGCCGGCCGGTGCGCTTAACGCCAGAAGGGAA 1260996 Query 157 GGTCGGTGAAGACCAG---TTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTG 213 | | | || | | |||||| ||| | |||||||| ||||||| || |||||| Sbjct 1260995 AGCCCGCGAGGGGCTCGCTTTCCGCCTCACCCAGTAAGTAAAGAAACGATGAGAGTAGTG 1260936 Query 214 GTATTTCACTTGCG-CCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACA 272 ||||||||| || || || | ||||||| ||| |||||||| ||| ||| |||||| Sbjct 1260935 GTATTTCACCGACGGCCCGAAGGCCTCCCACCTATGCTACACCTTTCATGTCCCTTCACA 1260876 Query 273 AAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCG 332 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1260875 GAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCG 1260816 Query 333 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCA 392 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1260815 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCA 1260756 Query 393 TTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTA 452 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1260755 TTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTA 1260696 Query 453 CTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGC 512 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1260695 CTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGC 1260636 Query 513 AGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||| Sbjct 1260635 AGAAATCACATTGCGTCAACA 1260615 >seq68 Length=339116 Score = 583 bits (646), Expect = 3e-164 Identities = 465/561 (83%), Gaps = 34/561 (6%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||| || ||| ||||||| ||| |||| | ||||||||||||||||||| Sbjct 89885 CTTTTGCTCCACGCGAGGTTTCTGTCCTCGCTGAGCTCGCCTTAGGACACCTGCGTTACT 89826 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC----------ATC 116 ||| |||||||| ||||||||| |||||||||| ||||||| |||| ||| Sbjct 89825 CTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACACTGTCTTGGGAACGGATC 89766 Query 117 AA-CCCGGAT-----------------CGGCCCGCGAAGGACCTTAACGCCAGAAA--AT 156 | ||||| | ||||| || | ||||||||||||| | Sbjct 89765 ACGCCCGGCTGACGACCGCGGCGAGCGCGGCCGGCCGGCGCGCTTAACGCCAGAAGGGAA 89706 Query 157 GGTCGGTGAAGACCAG---TTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTG 213 | | || | | |||||| ||| | |||||||| ||||||| || |||||| Sbjct 89705 AGCCCACGAGGGGCTCGCTTTCCGCCTCACCCAGTAAGTAAAGAAACGATGAGAGTAGTG 89646 Query 214 GTATTTCACTTGCG-CCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACA 272 ||||||||| || || || | ||||||| ||| |||||||| ||| ||| |||||| Sbjct 89645 GTATTTCACCGACGGCCCAAGAGCCTCCCACCTATGCTACACCTTTCATGTCCCTTCACA 89586 Query 273 AAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCG 332 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 89585 GAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCG 89526 Query 333 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCA 392 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 89525 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCA 89466 Query 393 TTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTA 452 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 89465 TTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTA 89406 Query 453 CTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGC 512 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 89405 CTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGC 89346 Query 513 AGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||| Sbjct 89345 AGAAATCACATTGCGTCAACA 89325 >seq97 Length=2734008 Score = 327 bits (362), Expect = 4e-87 Identities = 181/181 (100%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2614477 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 2614418 Query 413 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2614417 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 2614358 Query 473 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2614357 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 2614298 Query 533 A 533 | Sbjct 2614297 A 2614297 >seq42 Length=7062306 Score = 138 bits (152), Expect = 4e-30 Identities = 87/94 (93%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 437 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496 |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| Sbjct 4085207 AAGAGAGTCATAGTTACTCCCGCCATTTGTTAGCGCTTGGTTGAATTTCTTCACTTTGAC 4085148 Query 497 ATTCAGAGCACTGGGCAGAAATCACATTGCGTCA 530 |||||||||||||| ||||||||||||||| ||| Sbjct 4085147 ATTCAGAGCACTGGACAGAAATCACATTGCATCA 4085114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635193491904