Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq320 98.7 2e-18 seq282 98.7 2e-18 seq227 98.7 2e-18 seq108 98.7 2e-18 seq97 98.7 2e-18 seq68 98.7 2e-18 seq37 98.7 2e-18 seq199 89.7 8e-16 >seq320 Length=169741 Score = 98.7 bits (108), Expect = 2e-18 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | |||||| ||| | |||| || | || Sbjct 169573 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTTCAGGCGCTCGGCTGATGAGCCGGT 169516 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||| ||||||||||| |||||||| |||||||||||||||||||||||| ||| Sbjct 169515 GGTGCGAGGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCAGAATCCCGCCCA 169456 Query 121 GAA 123 ||| Sbjct 169455 GAA 169453 >seq282 Length=304269 Score = 98.7 bits (108), Expect = 2e-18 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | |||||| ||| | |||| || | || Sbjct 25457 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTTCAGGCGCTCGGCTGATGAGCCGGT 25400 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||| ||||||||||| |||||||| |||||||||||||||||||||||| ||| Sbjct 25399 GGTGCGAGGCTACCATCTGGGGGATTATGACTGAACGCCTCTAAGTCAGAATCCCGCCCA 25340 Query 121 GAA 123 ||| Sbjct 25339 GAA 25337 Score = 98.7 bits (108), Expect = 2e-18 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | |||||| ||| | |||| || | || Sbjct 28292 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTTCAGGCGCTCGGCTGATGAGCCGGT 28235 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||| ||||||||||| |||||||| |||||||||||||||||||||||| ||| Sbjct 28234 GGTGCGAGGCTACCATCTGGGGGATTATGACTGAACGCCTCTAAGTCAGAATCCCGCCCA 28175 Query 121 GAA 123 ||| Sbjct 28174 GAA 28172 >seq227 Length=1676436 Score = 98.7 bits (108), Expect = 2e-18 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | |||||| ||| | |||| || | || Sbjct 247605 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTTCAGGCGCTCGGCTGATGAGCCGGT 247548 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||| ||||||||||| |||||||| |||||||||||||||||||||||| ||| Sbjct 247547 GGTGCGAGGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCAGAATCCCGCCCA 247488 Query 121 GAA 123 ||| Sbjct 247487 GAA 247485 >seq108 Length=2664055 Score = 98.7 bits (108), Expect = 2e-18 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | |||||| ||| | |||| || | || Sbjct 1261500 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTTCAGGCGCTCGGCTGATGAGCCGGT 1261557 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||| ||||||||||| |||||||| |||||||||||||||||||||||| ||| Sbjct 1261558 GGTGCGAGGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCAGAATCCCGCCCA 1261617 Query 121 GAA 123 ||| Sbjct 1261618 GAA 1261620 >seq97 Length=2734008 Score = 98.7 bits (108), Expect = 2e-18 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | |||||| ||| | |||| || | || Sbjct 2613292 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTTCAGGCGCTCGGCTGATGAGCCGGT 2613349 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||| ||||||||||| |||||||| |||||||||||||||||||||||| ||| Sbjct 2613350 GGTGCGAGGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCAGAATCCCGCCCA 2613409 Query 121 GAA 123 ||| Sbjct 2613410 GAA 2613412 Score = 98.7 bits (108), Expect = 2e-18 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | |||||| ||| | |||| || | || Sbjct 2614764 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTTCAGGCGCTCGGCTGATGAGCCGGT 2614821 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||| ||||||||||| |||||||| |||||||||||||||||||||||| ||| Sbjct 2614822 GGTGCGAGGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCAGAATCCCGCCCA 2614881 Query 121 GAA 123 ||| Sbjct 2614882 GAA 2614884 >seq68 Length=339116 Score = 98.7 bits (108), Expect = 2e-18 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | |||||| ||| | |||| || | || Sbjct 90956 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTTCAGGCGCTCGGCTGATGAGCCGGT 91013 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||| ||||||||||| |||||||| |||||||||||||||||||||||| ||| Sbjct 91014 GGTGCGAGGCTACCATCTGGGGGATTATGACTGAACGCCTCTAAGTCAGAATCCCGCCCA 91073 Query 121 GAA 123 ||| Sbjct 91074 GAA 91076 >seq37 Length=6811162 Score = 98.7 bits (108), Expect = 2e-18 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||| ||||||| | |||||| | ||||||| ||| | |||| || | || Sbjct 4565595 GTACGAGAAGAACCGCAGG-TTCAGAC-ATTTGGTTTAGGCGCTCGGCTGATGAGCCGGT 4565652 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||| ||||||||||| |||||||| |||||||||||||||||||||||| ||| Sbjct 4565653 GGTGCGAGGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCAGAATCCCGCCCA 4565712 Query 121 GAA 123 ||| Sbjct 4565713 GAA 4565715 Score = 82.4 bits (90), Expect = 1e-13 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | |||||| ||| | |||| || | || Sbjct 4582871 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTTCAGGCGCTCGGCTGATGAGCCGGT 4582928 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | || |||||||||| |||||||| ||||||||||||||||||||| || ||| Sbjct 4582929 GGTGTGAGGCTACCATCTAAAGGATTATGACTGAACGCCTCTAAGTCAGAACCCCGCCCA 4582988 Query 121 GA 122 || Sbjct 4582989 GA 4582990 >seq199 Length=1763339 Score = 89.7 bits (98), Expect = 8e-16 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | |||||| | | | |||| || | || Sbjct 940668 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTTCAGGTGCTCGGCTGATAAGCCGGT 940611 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||| ||||||||||| ||| |||| |||||||||||||||||||||||| ||| Sbjct 940610 GGTGCGAGGCTACCATCTGAGGGAATATGACTGAACGCCTCTAAGTCAGAATCCCGCCCA 940551 Query 121 GAA 123 ||| Sbjct 940550 GAA 940548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819196841472