Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq70 84.2 2e-11 >seq70 Length=4241797 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 161008 CCCTACTCCTGTCGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACT 161067 ||||||||||| || || || || || || || || || |||||||| | | ||| || Sbjct 4032332 CCCTACTCCTGCCGAGCGGGCGCGTGTTCCACCTGCGCCGGTAAGATCGTGTCTGGCACC 4032273 Query 161068 GTAGATCAATCTGATCAATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTG 161127 || ||||| || || || ||||||||||| || ||| | | | |||| | |||||| Sbjct 4032272 GTGGATCAGAGCGACCAGTCCTTCCTGGATGACGACCAAATCGCAGCAGGGTACGTCCTG 4032213 Query 161128 ACCTGCGTTGC 161138 |||||||| || Sbjct 4032212 ACCTGCGTGGC 4032202 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 161008 CCCTACTCCTGTCGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACT 161067 ||||||||||| || || || || || || || || || |||||||| | | ||| || Sbjct 4022646 CCCTACTCCTGCCGGGCGGGCGCATGTTCCACCTGCGCCGGTAAGATCGTGTCTGGCACC 4022705 Query 161068 GTAGATCAATCTGATCAATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTG 161127 || |||||| || || || |||||||| || |||||| | | | |||| | |||||| Sbjct 4022706 GTGGATCAAAGCGACCAGTCCTTCCTGGACGACGATCAAATCGCAGCAGGGTACGTCCTG 4022765 Query 161128 ACCTG 161132 ||||| Sbjct 4022766 ACCTG 4022770 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 161008 CCCTACTCCTGTCGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACT 161067 ||||||||||| || || || || ||| | || || || |||||||| | | ||| || Sbjct 4027343 CCCTACTCCTGCCGGGCGGGCGCATGCACCACCTGCGCCGGTAAGATCGTGTCTGGCACC 4027402 Query 161068 GTAGATCAATCTGATCAATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTG 161127 || ||||| || || | |||||||||| || ||| | | | |||| || |||||| Sbjct 4027403 GTGGATCAGAGCGACCAGACCTTCCTGGATGCGGACCAAATGGCAGCAGGGTTCGTCCTG 4027462 Query 161128 ACCTGCGTTGCTTATCCCAC 161147 |||||||| || || || || Sbjct 4027463 ACCTGCGTGGCCTACCCAAC 4027482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551373256904400