Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq17498 473 2e-131 seq2706 233 4e-59 seq12450 116 7e-24 seq9325 116 7e-24 seq15982 113 8e-23 >seq17498 Length=7131 Score = 473 bits (524), Expect = 2e-131 Identities = 294/314 (94%), Gaps = 1/314 (0%) Strand=Plus/Minus Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64 |||||||||||||||||||| |||| ||| || |||||||||||||||||||| |||||| Sbjct 6124 TGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCCCATGCCCTTCACTGGGTGTGGCGGGGA 6065 Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124 ||||||||||||| |||||||||||||||| || | |||||||| ||||||||||||| Sbjct 6064 AACAGGACTTTTACTGTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACAT 6005 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 6004 TAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 5945 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 5944 AATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 5885 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| || Sbjct 5884 ATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAG-GA 5826 Query 305 ACGAAAGTTAGGGG 318 |||||||||||||| Sbjct 5825 ACGAAAGTTAGGGG 5812 >seq2706 Length=2700 Score = 233 bits (258), Expect = 4e-59 Identities = 203/248 (82%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 1586 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 1645 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | |||| ||||| ||||| | ||| || |||||||| Sbjct 1646 GGGATAACATTATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGAGTAATGAT 1704 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 1705 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 1764 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||||||||||| || |||||||||||||||||||||| |||||||| Sbjct 1765 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 1823 Query 311 GTTAGGGG 318 ||| |||| Sbjct 1824 GTTGGGGG 1831 >seq12450 Length=1176 Score = 116 bits (128), Expect = 7e-24 Identities = 203/289 (70%), Gaps = 16/289 (6%) Strand=Plus/Minus Query 31 GGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA--GCCAGGAC-TTTTACTTTGAAAAA 87 |||||| ||||||| || ||||| |||||| ||| | | ||||||||||||||| Sbjct 654 GGATCCTGGTGCCCTTTACCGGGTG--CCGGGGTCTGCCCGCAAGTTTTACTTTGAAAAA 597 Query 88 ATTAGAGTGTTCAAAGCAGGC---CTTTGCTCGAATACATTAGCATGGAATAATAGAATA 144 || |||||| ||||||||||| | || |||| || | |||||||||| ||| | Sbjct 596 ATCAGAGTGCTCAAAGCAGGCCGGCAGAGCCTGAATGCAATTTCATGGAATAAATGAACA 537 Query 145 GGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC-CGCCGTAATGATTAATAGGGATAGT 203 ||| | || || |||||| ||| || | | |||||||| || |||| | Sbjct 536 AGACCTCCG------TTCTGTTGGGTTCCAGTTCTGGAGGTAATGATCAAGAGGGCCTGA 483 Query 204 CGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTA 263 |||||| | ||||| | | ||||||||||||| || | ||||| ||||| Sbjct 482 CGGGGGCATACGTATTGCAGGGCGAGAGGTGAAATTCAGTGACCCTTGCAAGACGAACTA 423 Query 264 CTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 |||||||| || ||||| ||| |||| || |||| |||||||||| Sbjct 422 AAGCGAAAGCATTTGCCAAGAATGGTTTCCTTGATCA-AGAACGAAAGT 375 >seq9325 Length=1356 Score = 116 bits (128), Expect = 7e-24 Identities = 203/289 (70%), Gaps = 16/289 (6%) Strand=Plus/Minus Query 31 GGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA--GCCAGGAC-TTTTACTTTGAAAAA 87 |||||| ||||||| || ||||| |||||| ||| | | ||||||||||||||| Sbjct 708 GGATCCTGGTGCCCTTTACCGGGTG--CCGGGGTCTGCCCGCAAGTTTTACTTTGAAAAA 651 Query 88 ATTAGAGTGTTCAAAGCAGGC---CTTTGCTCGAATACATTAGCATGGAATAATAGAATA 144 || |||||| ||||||||||| | || |||| || | |||||||||| ||| | Sbjct 650 ATCAGAGTGCTCAAAGCAGGCCGGCAGAGCCTGAATGCAATTTCATGGAATAAATGAACA 591 Query 145 GGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC-CGCCGTAATGATTAATAGGGATAGT 203 ||| | || || |||||| ||| || | | |||||||| || |||| | Sbjct 590 AGACCTCCG------TTCTGTTGGGTTCCAGTTCTGGAGGTAATGATCAAGAGGGCCTGA 537 Query 204 CGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTA 263 |||||| | ||||| | | ||||||||||||| || | ||||| ||||| Sbjct 536 CGGGGGCATACGTATTGCAGGGCGAGAGGTGAAATTCAGTGACCCTTGCAAGACGAACTA 477 Query 264 CTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 |||||||| || ||||| ||| |||| || |||| |||||||||| Sbjct 476 AAGCGAAAGCATTTGCCAAGAATGGTTTCCTTGATCA-AGAACGAAAGT 429 >seq15982 Length=1026 Score = 113 bits (124), Expect = 8e-23 Identities = 202/289 (70%), Gaps = 16/289 (6%) Strand=Plus/Plus Query 31 GGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA--GCCAGGAC-TTTTACTTTGAAAAA 87 |||||| ||||||| || ||||| |||||| ||| | | ||||||||||||||| Sbjct 691 GGATCCTGGTGCCCTTTACCGGGTG--CCGGGGTCTGCCCGCAAGTTTTACTTTGAAAAA 748 Query 88 ATTAGAGTGTTCAAAGCAGGC---CTTTGCTCGAATACATTAGCATGGAATAATAGAATA 144 || |||||| ||||||||||| | || |||| || | |||||||||| ||| | Sbjct 749 ATCAGAGTGCTCAAAGCAGGCCGGCAGAGCCTGAATGCAATTTCATGGAATAAATGAACA 808 Query 145 GGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC-CGCCGTAATGATTAATAGGGATAGT 203 ||| | || || ||||| ||| || | | |||||||| || |||| | Sbjct 809 AGACCTCCG------TTCTGTTGNGTTCCAGTTCTGGAGGTAATGATCAAGAGGGCCTGA 862 Query 204 CGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTA 263 |||||| | ||||| | | ||||||||||||| || | ||||| ||||| Sbjct 863 CGGGGGCATACGTATTGCAGGGCGAGAGGTGAAATTCAGTGACCCTTGCAAGACGAACTA 922 Query 264 CTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 |||||||| || ||||| ||| |||| || |||| |||||||||| Sbjct 923 AAGCGAAAGCATTTGCCAAGAATGGTTTCCTTGATCA-AGAACGAAAGT 970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915009610944