Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq20156 147 2e-30 seq2620 122 7e-23 >seq20156 Length=513389 Score = 147 bits (162), Expect = 2e-30 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 66292 CTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATC 66351 || ||| |||||||| ||||||||||| || | ||| || || || ||| || ||||| Sbjct 226749 CTCGTGGGGACACATGAGCGACCAATCTCCGTTCTGCTCAACTCGCTTCATGAACAGATC 226690 Query 66352 AGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTT 66411 ||| ||||| ||||||||||| ||||| | |||| || ||||| ||||| || || Sbjct 226689 AGGAATCCAAAGGGCGTAGAACAGATCCCTCGCTCTCTGTTCCTCCTTGCCGGTGTTCTT 226630 Query 66412 GCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACG 66470 ||| | |||||||| ||||| | ||| || |||||||| |||||||||||||| |||| Sbjct 226629 GCGACAATCGAGGAAATCAAAAACGTCTGCGTGCCATGGCTCCAGGTAGATGGCAAACG 226571 Score = 114 bits (126), Expect = 1e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 66034 TATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGT 66093 || ||| || || || | || |||||||| |||||||||||||| ||||| || || Sbjct 227095 TACCTCATCGGGGGCAGAGTATTCGACAATCTCGGTGCACAGATTGCTGCATTTGATCGT 227036 Query 66094 GCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGT 66153 || || ||||||||||| || || || ||||| | || ||||| | |||||||||||| Sbjct 227035 ACCTAAGTTCTGTTGATTGCTTTTTCGGTTGCAAGAGTCTTTGTATAACATGTACGGAGT 226976 Query 66154 GCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCA 66189 || || ||| || |||||||||||||| | ||| Sbjct 226975 TCCTGTTTCAGTCTGAGACTCAATGATGGCATACCA 226940 >seq2620 Length=811290 Score = 122 bits (134), Expect = 7e-23 Identities = 155/213 (73%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 61396 TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAAT 61455 |||||||| |||||||||||||| || || ||| |||||| |||||||| || | Sbjct 744099 TTGTTCAACGCCATCGAGACGATGCCCTGTGTTAAGGAGAAAGCTGATTGGGCATTGCGT 744040 Query 61456 TGGATCACCAGTAC----AACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGT 61511 ||||||| | | | | | ||| | ||| || || | |||||||| | || Sbjct 744039 TGGATCAATGATTCTCAGAGCAGTTAC----GCTGAGCGTGTGGTCGCATTTGCTGCTGT 743984 Query 61512 CGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACT 61571 |||||| | |||||| ||| || ||||| || ||||| ||||||||||| ||||| | Sbjct 743983 GGAGGGTATTTTTTTCTCTGGGTCTTTTGCAGCCATCTTCTGGTTGAAGAAGCGTGGCGT 743924 Query 61572 TATGCCCGGTCTGACCTTCAGCAATGAGTTGAT 61604 ||||| ||||| || ||||| || |||||||| Sbjct 743923 GATGCCTGGTCTCACGTTCAGTAACGAGTTGAT 743891 Score = 89.7 bits (98), Expect = 4e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 |||| || | ||| ||| || || ||||| ||||| | ||||| || | || | | Sbjct 744593 ATGAGCCTATGTTGAGAGATAACCCCCGTCGATTCGTCATTTTCCCAATACAATACCATG 744534 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATT 61144 | || |||| ||||||||||| || ||||| || |||||||||| ||||||||||| Sbjct 744533 ACATCTGGCAAATGTACAAAAAAGCTGAAGCGTCTTTCTGGACGGCAGAGGAGGTCGACC 744474 Query 61145 TGTCCAAAGACATGAATGACTGGGAGC 61171 | || |||||| | | ||||||||| Sbjct 744473 TCTCAAAAGACGTTTCTCACTGGGAGC 744447 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 61273 GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTC 61332 || || ||||| | || ||| | || ||||| || ||||||||||| || |||||| || Sbjct 744285 GAAGTTCAAGTCACAGAAGCGAGATGCTTCTATGGATTCCAGATTGCGATTGAGAATATC 744226 Query 61333 CACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 ||||| || |||||||| | || || ||||| ||||||| ||| Sbjct 744225 CACTCAGAAATGTACAGCCTGCTAATTGATACATACATCAAGGA 744182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397467201975920