Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_031940.1 Length=77375 Score E Sequences producing significant alignments: (Bits) Value seq1283 118 5e-22 seq2845 111 8e-20 >seq1283 Length=34873 Score = 118 bits (130), Expect = 5e-22 Identities = 261/385 (68%), Gaps = 21/385 (5%) Strand=Plus/Plus Query 38433 TACCCCAACGTAAATGCTGCCAATCAGTATGCCCGTGATGTCGTGCGCGGAAAGATTGTG 38492 |||||||| || ||| | ||||||| ||||| || ||||| || |||| || || | Sbjct 498 TACCCCAATGTTAATTCGGCCAATCGTTATGCGCGGGATGTAGTCAGCGGCAAAATCATT 557 Query 38493 GCCTGCCAGTTTGTGATTCAGGCCTGCCAGCGCCATCTTGATGACCTG----ATGGCGGA 38548 ||||||| | ||| | ||| || || || || || ||||| ||| || | | Sbjct 558 GCCTGCCGTTATGTTCGCCTGGCTTGTCAACGTCACCTGGATGATCTGGGAAATTCCAAA 617 Query 38549 AAAAAGTAAGTCGTTTCGTTACCGCTTCGACAAGGACCAGGCTGAACGGGCCGCGAAATT 38608 |||||| | | | ||||| ||||| | ||| | |||||||| ||| ||||| Sbjct 618 AAAAAGGATTAC----CCCTACCGATTCGATAGAGACAAAGCTGAACGAGCCTGTAAATT 673 Query 38609 TATTCAGCTGTTGCCACACACCAAGGGGGAGTGGGCATTCAAACG-------GA--TGCC 38659 ||||||||| | || || ||||| || ||||||||| || || || || Sbjct 674 TATTCAGCTTCTCCCCCATACCAAAGGAGAGTGGGCAAGAAAGCGCGGGCCTGAAGGGCT 733 Query 38660 CATCACGCTGGAGCCGTGGCAGCTCTTTGTGATCTGCTGC-GCGTTTGGCTGGGTCAATA 38718 || |||||||| ||||| | ||| | |||| | || | |||||||||||| || Sbjct 734 AATAACGCTGGAAAGCTGGCAACGGTTTATTATCT-CGGCGGTGTTTGGCTGGGTTTTTA 792 Query 38719 AAGGCTCCCGGC-TGCGCCGCTTCCGGGAGGTGTATACCGAAATCCCCCGTAAGAACGGC 38777 || | | ||| | || || ||| | || || |||| |||||| | || || || || Sbjct 793 AA-TCAACGGGCTTACGTCGTTTCAGTGAAGTTTATAACGAAATTTCACGGAAAAATGGT 851 Query 38778 AAATCGGCAATCTCTGCCGGTGTTG 38802 ||||| ||||| |||| ||||||| Sbjct 852 AAATCCGCAATAACTGCGGGTGTTG 876 >seq2845 Length=23415 Score = 111 bits (122), Expect = 8e-20 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 28399 CTTGATTGCTCTCCTGAGTTTACTGCCCGCAATTTTGCGGTGAGTGATTACACCGACGCA 28458 || || ||||||| || || |||| | |||||||| | ||||| ||||| ||| || Sbjct 23029 CTGGAATGCTCTCAAGAATTCACTGAGCTCAATTTTGAGCCCAGTGAATACACAGACCCA 23088 Query 28459 TCTGGCCGCAAACTACCTTGCTATCAAATAACCCGCGACGGCTTTGCTTTCCTTGCTATG 28518 | ||||| || || |||| |||| ||||| ||||| || | || | || ||| Sbjct 23089 ACCGGCCGAAAGCTGGAAAGCTACAAAATCACCCGGGACGGTTTCACGTTTTTAGCCATG 23148 Query 28519 GGTTTCACGGGTAAACGTGCTGCCCAGTTCAAAGAGGCATACATCAATGCCTTTAACCAG 28578 || ||||| || ||| || ||| | |||||||| ||||| ||||||||||||||| Sbjct 23149 GGCTTCACCGGCAAAAAAGCCGCCGCCTGGAAAGAGGCCTACATTAATGCCTTTAACCAG 23208 Query 28579 ATGGAGAAACAGCT 28592 ||||| |||| ||| Sbjct 23209 ATGGAAAAACGGCT 23222 Score = 93.3 bits (102), Expect = 2e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 68082 GCTATCAAATCACCCGCGATGGTTTTGCGTTCCTGGCAATGGGTTTTACGGGCAAACGCG 68141 |||| |||||||||| || ||||| |||| | || ||||| || || |||||| | Sbjct 23108 GCTACAAAATCACCCGGGACGGTTTCACGTTTTTAGCCATGGGCTTCACCGGCAAAAAAG 23167 Query 68142 CCGCCCAATTCAAAGAGGCATACATCAATGCCTTTAACCAGATGGAGAAAC 68192 ||||| | |||||||| ||||| |||||||||||||||||||| |||| Sbjct 23168 CCGCCGCCTGGAAAGAGGCCTACATTAATGCCTTTAACCAGATGGAAAAAC 23218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 247412455988488