Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1 122 4e-25 seq420 75.2 5e-11 >seq1 Length=10041005 Score = 122 bits (134), Expect = 4e-25 Identities = 81/90 (90%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 584 TGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTC 643 |||||||||||||| ||| ||||||||||||||||||||||||||| || || | ||| Sbjct 8626622 TGAACTATGCCTGAGGAGGTTGAAGCCAGAGGAAACTCTGGTGGAGGACCGTAGTGATTC 8626563 Query 644 TGGCGTGCAAATCGATCGTCAAATTTGGGT 673 || ||||||||||||||||||||||||||| Sbjct 8626562 TGACGTGCAAATCGATCGTCAAATTTGGGT 8626533 >seq420 Length=6555 Score = 75.2 bits (82), Expect = 5e-11 Identities = 52/58 (90%), Gaps = 2/58 (3%) Strand=Plus/Plus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 622 |||||||||||||||||||||||||| ||||| ||| ||||||||| ||||||||| Sbjct 1217 GTTGGGACCCGAAAGATGGTGAACTA--CCTGAGGAGGTTGAAGCCAGGGGAAACTCT 1272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079972715600