Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq925 188 1e-45 seq178 132 8e-29 seq1216 105 1e-20 seq1 78.8 2e-12 >seq925 Length=76709 Score = 188 bits (208), Expect = 1e-45 Identities = 140/161 (87%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 135 TGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGC 194 |||||| | ||| ||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 43579 TGATAGCA-GAGGCGACATCGAAGGATCAAAAAGCAACTTCGCTATGAACGCTCGGCTGC 43521 Query 195 CACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCG-AGGG 253 ||||||||||||||||||||||||||||||||||||||||| | || || ||| | | Sbjct 43520 CACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTTGGCTTGAAACTCGCAAGT 43461 Query 254 ACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 |||||||||||||||||| ||||| ||| |||||||| Sbjct 43460 TTAAAAGGATCGATAGGCCACGCTTTCGCGGTCTGTATTCA 43420 >seq178 Length=11427 Score = 132 bits (146), Expect = 8e-29 Identities = 73/73 (100%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 136 GATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCC 195 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11427 GATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCC 11368 Query 196 ACAAGCCAGTTAT 208 ||||||||||||| Sbjct 11367 ACAAGCCAGTTAT 11355 >seq1216 Length=61576 Score = 105 bits (116), Expect = 1e-20 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 163 AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTT 222 ||||||||| |||| |||||||| |||| ||||||||||||||||||||||||||||||| Sbjct 24471 AAAAAGCAAAGTCGTTATGAACGATTGGTTGCCACAAGCCAGTTATCCCTGTGGTAACTT 24530 Query 223 TTCTGGCACCTCT 235 ||||| ||| ||| Sbjct 24531 TTCTGACACATCT 24543 >seq1 Length=10041005 Score = 78.8 bits (86), Expect = 2e-12 Identities = 60/71 (85%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 163 AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTT 222 ||||| || | || |||| | |||||||| ||||||||||||||| ||||||||||||| Sbjct 1922423 AAAAAACAGCTTCACTATATATGCTTGGCTACCACAAGCCAGTTATTCCTGTGGTAACTT 1922482 Query 223 TTCTGGCACCT 233 || | |||||| Sbjct 1922483 TTATTGCACCT 1922493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854389132032