Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq485 178 4e-42 seq925 143 9e-32 seq8 125 2e-26 seq1224 102 3e-19 seq1269 89.7 2e-15 seq698 86.0 2e-14 seq9 86.0 2e-14 seq3 84.2 7e-14 >seq485 Length=5875 Score = 178 bits (196), Expect = 4e-42 Identities = 117/130 (90%), Gaps = 7/130 (5%) Strand=Plus/Plus Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 || |||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||| Sbjct 2364 AGAGTCTTCTTTCCCTGCTAATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 2423 Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417 ||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 2424 -------TAGGGACAGCGGGAATCTCGTTAAACCATTCATGCGCGTCACTAATTAGATGA 2476 Query 418 CGAGGCATTT 427 |||||||||| Sbjct 2477 CGAGGCATTT 2486 Score = 77.0 bits (84), Expect = 1e-11 Identities = 59/66 (89%), Gaps = 7/66 (11%) Strand=Plus/Plus Query 437 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGC--GCTTGGTT--GAATTTCTTCA--C 490 |||||||||||||| ||||||||||||||||||| |||||||| ||||||||||| | Sbjct 5811 AAGAGAGTCATAGT-ACTCCCGCCGTTTACCCGCGNGCTTGGTTNNGAATTTCTTCANNC 5869 Query 491 TTTGAC 496 |||||| Sbjct 5870 TTTGAC 5875 >seq925 Length=76709 Score = 143 bits (158), Expect = 9e-32 Identities = 100/114 (88%), Gaps = 11/114 (10%) Strand=Plus/Minus Query 323 GCCAAGCCCGTTC----CCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGA 378 ||||||||||||| ||||||||||||||||||||||||| |||||| |||| Sbjct 69068 GCCAAGCCCGTTCGTTCCCTTGGCTGTGGTTTCGCTAGATAG-------GGACAGCGGGA 69016 Query 379 ATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 |||||| |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 69015 ATCTCGGTAATCCATTCATGCGCGTCACTAATTAGTTGACGAGGCATTTGGCTA 68962 Score = 102 bits (112), Expect = 3e-19 Identities = 61/63 (97%), Gaps = 1/63 (2%) Strand=Plus/Plus Query 370 ACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGG 429 |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 23365 ACAG-GGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGGGGCATTTGG 23423 Query 430 CTA 432 ||| Sbjct 23424 CTA 23426 Score = 93.3 bits (102), Expect = 1e-16 Identities = 84/105 (80%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 9 TTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGT 68 ||| |||||| ||| |||| || ||| |||| | ||||||||||||||||||| | Sbjct 43400 TTTTCTCTACGCGAGGTTTCCGTCCTCACTGAGCTCACCTTAGGACACCTGCGTTACTCT 43341 Query 69 TTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 || |||||||| ||||||||| |||||| || |||||||| ||| Sbjct 43340 TTGACAGATGTACCGCCCCAGTCAAACT--CCGCCTGACAAGGTC 43298 >seq8 Length=6398795 Score = 125 bits (138), Expect = 2e-26 Identities = 74/76 (97%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 382 TCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC-GAGGCATTTGGCTACCTTAAGA 440 |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 6366639 TCGTTAATTCATTCATGCGCGTCACTAATTAGATGACTGAGGCATTTGGCTACCTTAAGA 6366698 Query 441 GAGTCATAGTTACTCC 456 |||||||||||||||| Sbjct 6366699 GAGTCATAGTTACTCC 6366714 >seq1224 Length=458687 Score = 102 bits (112), Expect = 3e-19 Identities = 84/99 (85%), Gaps = 9/99 (9%) Strand=Plus/Plus Query 343 TGTGGTTTCGCTAGATAGTAG-ATAGGGACAGTGGGAATCTCGT-----TAATCCATTCA 396 ||||||||||||||||| ||| ||| |||| ||||||||||| ||||||||||| Sbjct 172876 TGTGGTTTCGCTAGATA-TAGTATATACACAGCGGGAATCTCGTAAGGTTAATCCATTCA 172934 Query 397 TGCGCGTCACTA--ATTAGATGACGAGGCATTTGGCTAC 433 || ||||||||| ||||||||||| ||||||||||||| Sbjct 172935 TGAGCGTCACTATAATTAGATGACGGGGCATTTGGCTAC 172973 >seq1269 Length=903750 Score = 89.7 bits (98), Expect = 2e-15 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 385 TTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAG 441 ||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||| Sbjct 198905 TTAATCCATTCATGCACGTCACTAATTAGATGACGAGCCATTTGACTACCTTAAGAG 198961 >seq698 Length=4207 Score = 86.0 bits (94), Expect = 2e-14 Identities = 52/55 (95%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 456 CCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGG 510 ||||||||||||||||||||||||||||||||||||||| |||| |||||| ||| Sbjct 4150 CCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGGCATTTAGAGCATTGG 4204 >seq9 Length=6586237 Score = 86.0 bits (94), Expect = 2e-14 Identities = 52/55 (95%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 313 CGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG 367 |||| |||| |||||||||||||||||||||||||||||||||| |||||||||| Sbjct 326660 CGCTAATTCAGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGGTAGTAGATAG 326714 >seq3 Length=6703989 Score = 84.2 bits (92), Expect = 7e-14 Identities = 48/49 (98%), Gaps = 0/49 (0%) Strand=Plus/Minus Query 384 GTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 5828831 GTTAATCCATTCATGCGTGTCACTAATTAGATGACGAGGCATTTGGCTA 5828783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635179200256