Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1224 143 8e-32 seq7 113 1e-22 seq10 105 2e-20 seq57 80.6 8e-13 seq9 78.8 3e-12 seq3 78.8 3e-12 seq1210 77.0 1e-11 seq6 77.0 1e-11 seq5 75.2 3e-11 >seq1224 Length=458687 Score = 143 bits (158), Expect = 8e-32 Identities = 140/177 (79%), Gaps = 4/177 (2%) Strand=Plus/Plus Query 328 GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAG 387 || ||| | | | || |||||||||||||| | || ||||| | ||||| ||| | Sbjct 120248 GAGGTCAGCGCTGTTTGCATGTATTAGCTCCACAACCACCACAATAATCCAAGTAAACAA 120307 Query 388 GTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT 447 ||| ||||||| ||| ||||| ||||||| |||||| ||||||||| ||||| | | Sbjct 120308 -TACGATCAAATGAACCATAACCGATTTAAGGAGCCA--CGCAGTTTCGCTGTACA-AGA 120363 Query 448 GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||| ||||||||| ||||||||||||||||||||| |||||||| || |||||||| Sbjct 120364 GCTCGTACTTAGACTTGCATGGCTTAATCTTTGAGAGAAGCATATCACCACTGGCAG 120420 >seq7 Length=6125209 Score = 113 bits (124), Expect = 1e-22 Identities = 88/104 (85%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGA 460 ||| || | ||||||||| |||||||||||||||| ||||| ||| ||| |||||||| Sbjct 4517582 AACCATTATTGATTTAATAAGCCATTCGCAGTTTCGCTGTAC-GATAGCTCGTACTTAGA 4517640 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | ||||||||| |||||||||||||| ||||| | |||||| || Sbjct 4517641 CCTGCATGGCTAAATCTTTGAGACAAACATATCAATACTGGTAG 4517684 Score = 86.0 bits (94), Expect = 2e-14 Identities = 72/87 (83%), Gaps = 5/87 (6%) Strand=Plus/Minus Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTT 472 ||||||||||||||||||||||| |||| || |||| ||||||||| ||||||| | Sbjct 6069088 TTTAATGAGCCATTCGCAGTTTCGTTGTA-CGAGAGCTTGTACTTAGACTTGCATGGTGT 6069030 Query 473 AATCTTTGAGACAAGCATATGACTACT 499 || |||||||||||||| |||||| Sbjct 6069029 AA----TGAGACAAGCATATCACTACT 6069007 >seq10 Length=4880875 Score = 105 bits (116), Expect = 2e-20 Identities = 81/95 (85%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGG 469 |||||||||||||||||| ||| || ||||| | | |||| ||||||||| ||||||| Sbjct 4017312 TGATTTAATGAGCCATTCAGAGTGTCGCTGTACA-AGAGCTTGTACTTAGACTTGCATGG 4017370 Query 470 CTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | |||||||| | |||||||||| ||||||||||| Sbjct 4017371 CCTAATCTTTAAAACAAGCATATCACTACTGGCAG 4017405 >seq57 Length=81022 Score = 80.6 bits (88), Expect = 8e-13 Identities = 64/76 (84%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 429 CAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGC 488 ||||||| ||||| || ||| ||||||||| ||||||| ||||||||||||| |||| Sbjct 69062 CAGTTTCGCTGTAC-GAGAGCTCGTACTTAGACTTGCATGGTTTAATCTTTGAGAGAAGC 69004 Query 489 ATATGACTACTGGCAG 504 | || ||||||||||| Sbjct 69003 AAATCACTACTGGCAG 68988 >seq9 Length=6586237 Score = 78.8 bits (86), Expect = 3e-12 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 454 ACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||| |||||||||||||||||||||||||||||| |||||||||| Sbjct 2232802 ACTTAGACTTGCATGGCTTAATCTTTGAGACAAGCATATCCCTACTGGCAG 2232752 >seq3 Length=6703989 Score = 78.8 bits (86), Expect = 3e-12 Identities = 73/91 (80%), Gaps = 5/91 (5%) Strand=Plus/Plus Query 352 TAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACT--ATCAAATAAACGATAAC 409 ||||| |||||||||||| |||||||| ||||| ||| |||| |||||| | ||| Sbjct 222350 TAGCTGTAGAATTACCACAGTTATCCA---AGTAAACTACACAATCATATAAACCAGAAC 222406 Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGT 440 | ||||||||||| | ||||||||| |||| Sbjct 222407 TTATTTAATGAGCAACTCGCAGTTTGGCTGT 222437 >seq1210 Length=618270 Score = 77.0 bits (84), Expect = 1e-11 Identities = 48/52 (92%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||| ||||||||||||| ||||| |||||||||| ||||||||||| Sbjct 557866 TACTTAGACTTGCATGGCTTAATTTTTGAAACAAGCATATCACTACTGGCAG 557815 >seq6 Length=2365711 Score = 77.0 bits (84), Expect = 1e-11 Identities = 82/106 (77%), Gaps = 8/106 (8%) Strand=Plus/Minus Query 302 TTTTATCTAATAAATACACCCCTTCCG--AAGTCGGGGTTTTTAGCATGTATTAGCTCTA 359 |||| ||| ||||| |||| ||| ||| ||||||| | | | | |||||| ||||||| Sbjct 744080 TTTTGTCTGATAAAAACACGCCTACCGCTAAGTCGGCGCTGTGTGTATGTATCAGCTCTA 744021 Query 360 GAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGA 405 |||||||||| |||||||| ||||| ||| | ||||||| || Sbjct 744020 GAATTACCACAGTTATCCA---AGTAA---ACTGTTAAATAAAAGA 743981 >seq5 Length=5035970 Score = 75.2 bits (82), Expect = 3e-11 Identities = 64/78 (82%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTT 472 ||||| ||||||||| |||| |||| | || |||| ||||| || |||||||||| Sbjct 3305170 TTTAACGAGCCATTCTGGATTTCTCTGTTT-GAGAGCTTGTACTTGGATTTGCATGGCTT 3305228 Query 473 AATCTTTGAGACAAGCAT 490 |||||||||||||||||| Sbjct 3305229 AATCTTTGAGACAAGCAT 3305246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510380787712