Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq637 89.7 4e-13 seq2986 87.8 1e-12 seq368 87.8 1e-12 >seq637 Length=333953 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 61399 TTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGG 61458 |||||||||||||| || | || ||| | ||| || || ||||| |||| ||| Sbjct 28135 TTCAATGCCATCGAAACCTTGCCATGTGTGCGGAAGAAGGCAGAGTGGGCTCTCAAGTGG 28076 Query 61459 ATCACCAGTACAACGGCT-ACATT-TGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGG 61516 || | ||| |||| | | || | || ||||||| | | |||||||| || |||| Sbjct 28075 AT-ATCAG-ACAAGGACGCACTGTATGCTGAACGAATAATCGCATTTGCCTCTGTGGAGG 28018 Query 61517 GTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGC 61576 | | ||||||||||| || ||||| || || || ||||| |||||||| || || |||| Sbjct 28017 GGATCTTTTTCAGTGGGTCATTTGCTGCCATTTTCTGGTTAAAGAAACGAGGGCTGATGC 27958 Query 61577 CCGGTCTGACCTTCAGCAATGA 61598 | || | || ||| |||||| Sbjct 27957 CTGGCTTAACTTTCTCCAATGA 27936 >seq2986 Length=361983 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 |||||||| | ||||| || | |||||||| | ||| | ||||| |||| |||||| Sbjct 209792 GAGAATCCAAGGCGTTTTGTCATCTTCCCCATTCAATATCATGATATCTGGCAGATGTAC 209733 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 ||||| || |||||||| |||||||| || |||||||| Sbjct 209732 AAAAAAGCTGAAGCTTCTTTCTGGACAGTTGAGGAGGT 209695 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 61399 TTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGG 61458 |||||||||||||| || | || ||| | ||| || || ||||| |||| ||| Sbjct 208960 TTCAATGCCATCGAAACCTTGCCATGTGTGCGGAAGAAGGCAGAGTGGGCGCTCAAGTGG 208901 Query 61459 ATCACCAGTACAACGGCT-ACATT-TGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGG 61516 || | ||| |||| | | || | || ||||||| | | |||||||| || |||| Sbjct 208900 AT-ATCAG-ACAAGGACGCACTGTATGCTGAACGAATAATCGCATTTGCCTCTGTGGAGG 208843 Query 61517 GTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGC 61576 | | ||||||||||| || ||||| || || || ||||| |||||||| || | |||| Sbjct 208842 GGATCTTTTTCAGTGGTTCATTTGCTGCCATTTTCTGGTTAAAGAAACGAGGGTTGATGC 208783 Query 61577 CCGGTCTGACCTTCAGCAATGA 61598 | || | || ||| |||||| Sbjct 208782 CTGGCTTAACTTTCTCCAATGA 208761 >seq368 Length=471785 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 |||||||| | ||||| || | |||||||| | ||| | ||||| |||| |||||| Sbjct 209599 GAGAATCCAAGGCGTTTTGTCATCTTCCCCATTCAATATCATGATATCTGGCAGATGTAC 209540 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 ||||| || |||||||| |||||||| || |||||||| Sbjct 209539 AAAAAAGCTGAAGCTTCTTTCTGGACAGTTGAGGAGGT 209502 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 61399 TTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGG 61458 |||||||||||||| || | || ||| | ||| || || ||||| |||| ||| Sbjct 208767 TTCAATGCCATCGAAACCTTGCCATGTGTGCGGAAGAAGGCAGAGTGGGCGCTCAAGTGG 208708 Query 61459 ATCACCAGTACAACGGCT-ACATT-TGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGG 61516 || | ||| |||| | | || | || ||||||| | | |||||||| || |||| Sbjct 208707 AT-ATCAG-ACAAGGACGCACTGTATGCTGAACGAATAATCGCATTTGCCTCTGTGGAGG 208650 Query 61517 GTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGC 61576 | | ||||||||||| || ||||| || || || ||||| |||||||| || | |||| Sbjct 208649 GGATCTTTTTCAGTGGTTCATTTGCTGCCATTTTCTGGTTAAAGAAACGAGGGTTGATGC 208590 Query 61577 CCGGTCTGACCTTCAGCAATGA 61598 | || | || ||| |||||| Sbjct 208589 CTGGCTTAACTTTCTCCAATGA 208568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397403214151760