Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq15953 140 1e-28 >seq15953 Length=1572 Score = 140 bits (154), Expect = 1e-28 Identities = 279/404 (69%), Gaps = 16/404 (4%) Strand=Plus/Minus Query 2517 CAAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAA 2576 ||||||||| ||||| |||| |||||||| |||| ||| ||||||||||||| ||||| Sbjct 1006 CAAATACCCGATCATTTCTATTGAAGATGGCATGGCTGAAGACGACTGGGACGGCTGGAA 947 Query 2577 ATCTCTTACTGA-ACGTCTTGGTGGTAAAGTT--CAATTGGTTGGTGACGACTTCTTCGT 2633 ||| || || | | | || || | |||||| |||||||| ||||| || | || || Sbjct 946 ATCCCTCACCAACAAGGCT-GGCG--AAAGTTGCCAATTGGTGGGTGATGATCTGTTTGT 890 Query 2634 AACTAACACTGCTTACC--TTGAAAAA-GGTATTGCAGAACACGCTGCTAACTCAATCCT 2690 || || || | || |||||| | || || || | || ||||| || || Sbjct 889 TACGAATACAAC---CCGTTTGAAAGACGGAATCGCCATGGGAGTCGCAAACTCCATTCT 833 Query 2691 TATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAA 2750 |||| || ||||| || ||| | | | || || || ||||| | || | || | Sbjct 832 GGTCAAGGTCAACCAGATTGGTTCGCTCAGCGAGACATTCGACGCGGTAGAGACCGCTCA 773 Query 2751 AGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACA-- 2808 ||||| ||||| | || | || |||||||| ||||| || ||||| ||||| Sbjct 772 TCGCGCTGGCTACACCTCCGTCATGTCCCACCGTTCCGGTGAGACCGAAGA--CAACACG 715 Query 2809 ATCGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGT 2868 ||||| || | || ||||| || || ||||| || || || ||||| | ||||| Sbjct 714 ATCGCAGACCTGGCTGTTGCCACAAATTGCGGTCAGATCAAAACCGGTTCTCTTTCACGC 655 Query 2869 ACTGACCGTATTGCTAAATACAACCAATTGCTTCGTATCGAAGA 2912 |||||||| | || ||||||||||| || | || || ||||| Sbjct 654 TCTGACCGTTTGGCCAAATACAACCAGCTGTTGCGCATTGAAGA 611 Score = 80.6 bits (88), Expect = 8e-11 Identities = 201/303 (66%), Gaps = 2/303 (1%) Strand=Plus/Minus Query 1939 GACCGCGCAATGATCGCTCTTGACGGTACTCCAAACAAAGGTAAACTTGGTGCCAACGCT 1998 || || || ||||| | ||||||| || | |||||| ||| |||| ||||| || Sbjct 1566 GATCGTGCCATGATTGACTTTGACGGCACCGCTAACAAATCGAAATTTGGCGCCAATGCA 1507 Query 1999 ATTCTTGGTGTGTCTATCGCTGTAGCACGCGCAGCTGCTGACTACCTTGAAGTTCCACTT 2058 ||||| |||||||| | || ||| || || ||||| | | || | || ||| Sbjct 1506 ATTCTGGGTGTGTCCCTTGCAACAGCCAAGGCGGCCGCTGAATCCGCTGGCGCACCGCTT 1447 Query 2059 TACAGCTACCTTGGCGGATTCAACACTAAAGTTCTTCCAACTCCAATGATGAACATCATC 2118 || | || || ||||| | || | ||||| || || ||||||||||||||| Sbjct 1446 TATCGATATCTCGGCGGCCCCTCAGCTCACGTTCTGCCGGTGCCGATGATGAACATCATC 1387 Query 2119 AACGGTGGTTCTCACTCAGACGCTCCAATCGCTTTCCAAGAATTTATGATTGTACCTGCT 2178 || || || || | ||| || |||| ||| || ||||| ||||| | |||| Sbjct 1386 AATGGCGGCGAGCATGCCGACAACCCGATCGATTTTCAGGAATTCATGATCATGCCTGTG 1327 Query 2179 GGTGCACCAACATTCAAAGA-AGCGCTTCGTTGGGGTGCTGAAATCTTCCACGCGCTTAA 2237 || || ||| ||| || ||| || || ||| || ||||| |||||| || | || Sbjct 1326 GGAGCCGAAACCTTCTGCGAGAGC-CTGCGCATGGGCGCAGAAATATTCCACACGTTGAA 1268 Query 2238 GAA 2240 ||| Sbjct 1267 GAA 1265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155975382819396