Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Corbicula_20fluminea_20[genbank_20GCA_5F001632725.1_202016-04-26] 778 sequences; 662,517 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1 158 5e-36 >seq1 Length=7763 Score = 158 bits (174), Expect = 5e-36 Identities = 116/135 (86%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| |||||| | |||||||||||||||||||||||||||| |||| |||| |||| Sbjct 3042 GAGCAAGAGCGCACACGTTGGGACCCGAAAGATGGTGAACTATGTCTGAGTAGGACGAAG 2983 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 ||| |||||||||| |||||| ||||||| ||||| |||||||||||||||||||| | Sbjct 2982 TCAGGGGAAACTCTGATGGAGGTCCGCAGCGATTCTGACGTGCAAATCGATCGTCAAACT 2923 Query 669 TGGGTATAGGGGCGA 683 ||| ||||||||||| Sbjct 2922 TGGATATAGGGGCGA 2908 Score = 136 bits (150), Expect = 2e-29 Identities = 116/143 (81%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || ||| |||||| | | |||| ||||||| Sbjct 3757 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCACCTAAGGCTAAAT 3698 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| ||| ||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 3697 ACTGGCACGAGTCCGATAGCGGACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAAG 3638 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 3637 AGAGAGTTCAAGAGTACGTGAAA 3615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079983311900