Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq6085 401 9e-110 seq6303 199 6e-49 seq6211 199 6e-49 seq6052 199 6e-49 seq749 199 6e-49 seq446 199 6e-49 seq175 199 6e-49 seq2554 95.1 2e-17 >seq6085 Length=2588 Score = 401 bits (444), Expect = 9e-110 Identities = 245/256 (96%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 98 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 155 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 156 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 215 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 216 CCCGGGCCTGTCGGCCAAGGCTATAAACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 275 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 276 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGCGGCCTAAAAG 335 Query 241 GCCAT-CTCCCTCGAA 255 ||| | |||||| || Sbjct 336 GCCGTAGTCCCTCTAA 351 >seq6303 Length=3216 Score = 199 bits (220), Expect = 6e-49 Identities = 204/257 (79%), Gaps = 7/257 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||| | Sbjct 2253 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCGCTTACTGGGAATT-C 2310 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | | |||| || | ||||| | ||||| | | ||||| | || Sbjct 2311 CTCGTTCATGGGGAG-AATTACACACCCCAATCCCTAGCACGAAGGAGGTTCAACGGGTT 2369 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| |||| | ||| | |||| ||||| | | ||||||||||||||||||| Sbjct 2370 ACCCGACCCTTTCGGGCCAGGACAGAGACCTGTTGATTCCTTCAGTGTAGCGCGCGTGCG 2429 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 |||| |||||||||||||||||||||||||||||||| ||||| || |||| ||||| Sbjct 2430 GCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTAAAC 2487 Query 240 GGC-CATCTCCCTCGAA 255 | | | | |||||| || Sbjct 2488 GCCACTTGTCCCTCTAA 2504 >seq6211 Length=2874 Score = 199 bits (220), Expect = 6e-49 Identities = 204/257 (79%), Gaps = 7/257 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||| | Sbjct 2285 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCGCTTACTGGGAATT-C 2342 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | | |||| || | ||||| | ||||| | | ||||| | || Sbjct 2343 CTCGTTCATGGGGAG-AATTACACACCCCAATCCCTAGCACGAAGGAGGTTCAACGGGTT 2401 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| |||| | ||| | |||| ||||| | | ||||||||||||||||||| Sbjct 2402 ACCCGACCCTTTCGGGCCAGGACAGAGACCTGTTGATTCCTTCAGTGTAGCGCGCGTGCG 2461 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 |||| |||||||||||||||||||||||||||||||| ||||| || |||| ||||| Sbjct 2462 GCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTAAAC 2519 Query 240 GGC-CATCTCCCTCGAA 255 | | | | |||||| || Sbjct 2520 GCCACTTGTCCCTCTAA 2536 >seq6052 Length=2439 Score = 199 bits (220), Expect = 6e-49 Identities = 204/257 (79%), Gaps = 7/257 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||| | Sbjct 522 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCGCTTACTGGGAATT-C 465 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | | |||| || | ||||| | ||||| | | ||||| | || Sbjct 464 CTCGTTCATGGGGAG-AATTACACACCCCAATCCCTAGCACGAAGGAGGTTCAACGGGTT 406 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| |||| | ||| | |||| ||||| | | ||||||||||||||||||| Sbjct 405 ACCCGACCCTTTCGGGCCAGGACAGAGACCTGTTGATTCCTTCAGTGTAGCGCGCGTGCG 346 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 |||| |||||||||||||||||||||||||||||||| ||||| || |||| ||||| Sbjct 345 GCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTAAAC 288 Query 240 GGC-CATCTCCCTCGAA 255 | | | | |||||| || Sbjct 287 GCCACTTGTCCCTCTAA 271 >seq749 Length=517955 Score = 199 bits (220), Expect = 6e-49 Identities = 204/257 (79%), Gaps = 7/257 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||| | Sbjct 341604 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCGCTTACTGGGAATT-C 341661 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | | |||| || | ||||| | ||||| | | ||||| | || Sbjct 341662 CTCGTTCATGGGGAG-AATTACACACCCCAATCCCTAGCACGAAGGAGGTTCAACGGGTT 341720 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| |||| | ||| | |||| ||||| | | ||||||||||||||||||| Sbjct 341721 ACCCGACCCTTTCGGGCCAGGACAGAGACCTGTTGATTCCTTCAGTGTAGCGCGCGTGCG 341780 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 |||| |||||||||||||||||||||||||||||||| ||||| || |||| ||||| Sbjct 341781 GCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTAAAC 341838 Query 240 GGC-CATCTCCCTCGAA 255 | | | | |||||| || Sbjct 341839 GCCACTTGTCCCTCTAA 341855 >seq446 Length=2878 Score = 199 bits (220), Expect = 6e-49 Identities = 204/257 (79%), Gaps = 7/257 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||| | Sbjct 1536 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCGCTTACTGGGAATT-C 1593 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | | |||| || | ||||| | ||||| | | ||||| | || Sbjct 1594 CTCGTTCATGGGGAG-AATTACACACCCCAATCCCTAGCACGAAGGAGGTTCAACGGGTT 1652 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| |||| | ||| | |||| ||||| | | ||||||||||||||||||| Sbjct 1653 ACCCGACCCTTTCGGGCCAGGACAGAGACCTGTTGATTCCTTCAGTGTAGCGCGCGTGCG 1712 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 |||| |||||||||||||||||||||||||||||||| ||||| || |||| ||||| Sbjct 1713 GCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTAAAC 1770 Query 240 GGC-CATCTCCCTCGAA 255 | | | | |||||| || Sbjct 1771 GCCACTTGTCCCTCTAA 1787 >seq175 Length=6454 Score = 199 bits (220), Expect = 6e-49 Identities = 204/257 (79%), Gaps = 7/257 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||| | Sbjct 4813 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCGCTTACTGGGAATT-C 4870 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | | |||| || | ||||| | ||||| | | ||||| | || Sbjct 4871 CTCGTTCATGGGGAG-AATTACACACCCCAATCCCTAGCACGAAGGAGGTTCAACGGGTT 4929 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| |||| | ||| | |||| ||||| | | ||||||||||||||||||| Sbjct 4930 ACCCGACCCTTTCGGGCCAGGACAGAGACCTGTTGATTCCTTCAGTGTAGCGCGCGTGCG 4989 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 |||| |||||||||||||||||||||||||||||||| ||||| || |||| ||||| Sbjct 4990 GCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTAAAC 5047 Query 240 GGC-CATCTCCCTCGAA 255 | | | | |||||| || Sbjct 5048 GCCACTTGTCCCTCTAA 5064 >seq2554 Length=3356 Score = 95.1 bits (104), Expect = 2e-17 Identities = 62/66 (94%), Gaps = 2/66 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||| |||||||||||||||||| |||| ||| Sbjct 3220 GTACAAAGGGCAGGGACGTAATCAACGCGAGC-TGATGACTCGCGCTTACTGGGAA-TTC 3277 Query 61 CTCGTT 66 |||||| Sbjct 3278 CTCGTT 3283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751944204185