Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq6085 131 9e-29 seq6303 82.4 4e-14 seq5982 82.4 4e-14 seq749 82.4 4e-14 seq446 82.4 4e-14 seq175 82.4 4e-14 >seq6085 Length=2588 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| || |||||| || Sbjct 628 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 687 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 688 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 744 >seq6303 Length=3216 Score = 82.4 bits (90), Expect = 4e-14 Identities = 92/120 (77%), Gaps = 5/120 (4%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGG-TGCCGAGCGAGTCAAAATGAT--AACATCG 57 |||||||||||||||| |||| || || ||| ||||||| ||| ||| || Sbjct 2780 GAACCCAAAGACTTTGGTTTCCCGGGGGGCTGCTCGCCGAGTCAT--TGAAGCAACTCCG 2837 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 | ||| ||||| ||||| ||||| ||| | ||||||||||||||||||||||||||| Sbjct 2838 GCGGATTGCTAGTTGGCATCGTTTATGGTCAGAACTACGACGGTATCTGATCGTCTTCGA 2897 >seq5982 Length=2219 Score = 82.4 bits (90), Expect = 4e-14 Identities = 92/120 (77%), Gaps = 5/120 (4%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGG-TGCCGAGCGAGTCAAAATGAT--AACATCG 57 |||||||||||||||| |||| || || ||| ||||||| ||| ||| || Sbjct 265 GAACCCAAAGACTTTGGTTTCCCGGGGGGCTGCTCGCCGAGTCAT--TGAAGCAACTCCG 322 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 | ||| ||||| ||||| ||||| ||| | ||||||||||||||||||||||||||| Sbjct 323 GCGGATTGCTAGTTGGCATCGTTTATGGTCAGAACTACGACGGTATCTGATCGTCTTCGA 382 >seq749 Length=517955 Score = 82.4 bits (90), Expect = 4e-14 Identities = 92/120 (77%), Gaps = 5/120 (4%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGG-TGCCGAGCGAGTCAAAATGAT--AACATCG 57 |||||||||||||||| |||| || || ||| ||||||| ||| ||| || Sbjct 342131 GAACCCAAAGACTTTGGTTTCCCGGGGGGCTGCTCGCCGAGTCAT--TGAAGCAACTCCG 342188 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 | ||| ||||| ||||| ||||| ||| | ||||||||||||||||||||||||||| Sbjct 342189 GCGGATTGCTAGTTGGCATCGTTTATGGTCAGAACTACGACGGTATCTGATCGTCTTCGA 342248 >seq446 Length=2878 Score = 82.4 bits (90), Expect = 4e-14 Identities = 92/120 (77%), Gaps = 5/120 (4%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGG-TGCCGAGCGAGTCAAAATGAT--AACATCG 57 |||||||||||||||| |||| || || ||| ||||||| ||| ||| || Sbjct 2063 GAACCCAAAGACTTTGGTTTCCCGGGGGGCTGCTCGCCGAGTCAT--TGAAGCAACTCCG 2120 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 | ||| ||||| ||||| ||||| ||| | ||||||||||||||||||||||||||| Sbjct 2121 GCGGATTGCTAGTTGGCATCGTTTATGGTCAGAACTACGACGGTATCTGATCGTCTTCGA 2180 >seq175 Length=6454 Score = 82.4 bits (90), Expect = 4e-14 Identities = 92/120 (77%), Gaps = 5/120 (4%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGG-TGCCGAGCGAGTCAAAATGAT--AACATCG 57 |||||||||||||||| |||| || || ||| ||||||| ||| ||| || Sbjct 5340 GAACCCAAAGACTTTGGTTTCCCGGGGGGCTGCTCGCCGAGTCAT--TGAAGCAACTCCG 5397 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 | ||| ||||| ||||| ||||| ||| | ||||||||||||||||||||||||||| Sbjct 5398 GCGGATTGCTAGTTGGCATCGTTTATGGTCAGAACTACGACGGTATCTGATCGTCTTCGA 5457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278380010010