Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq6085 233 4e-59 seq6303 190 4e-46 seq749 190 4e-46 seq446 190 4e-46 seq175 190 4e-46 seq5982 187 5e-45 seq5508 141 2e-31 seq5436 138 2e-30 seq5425 138 2e-30 seq5646 73.4 7e-11 >seq6085 Length=2588 Score = 233 bits (258), Expect = 4e-59 Identities = 203/248 (82%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 991 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 932 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | |||| ||||| ||||| | ||| || |||||||| Sbjct 931 GGGATAACATTATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGAGTAATGAT 873 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 872 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 813 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||||||||||| || |||||||||||||||||||||| |||||||| Sbjct 812 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 754 Query 311 GTTAGGGG 318 ||| |||| Sbjct 753 GTTGGGGG 746 >seq6303 Length=3216 Score = 190 bits (210), Expect = 4e-46 Identities = 219/285 (77%), Gaps = 11/285 (4%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGC--CGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGT 97 ||| ||| |||| || ||| |||| ||| ||||||||||||||||||||||||||| Sbjct 3178 TGCTCTTGACTGAGT-TGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGT 3120 Query 98 TCAAAGCAGGC-CTTTGCTCGAATACATTAG--CATGGAATAATAGAATAGGACGTGCGG 154 ||||||||||| ||| || | |||| | | ||||||||||| ||||||||| | ||| Sbjct 3119 TCAAAGCAGGCGCTTCGCCTG--TACAATGGTGCATGGAATAATGGAATAGGACCT-CGG 3063 Query 155 TTCTATTTTGTTGGTTTCTAGGAC-CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213 ||||||||||||||||| | || || ||||||||||| ||||| | |||||| | Sbjct 3062 TTCTATTTTGTTGGTTTTCGGAACACGAGGTAATGATTAAGAGGGACTGACGGGGGCATT 3003 Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273 |||| || ||||||||||||||||||| |||| |||| |||||||| Sbjct 3002 CGTATGGCGGGGTTAGAGGTGAAATTCTTGGATCCTCGCCAGACGGCCTACAGCGAAAGC 2943 Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || ||||| |||||||||||| ||| |||||||||| || || Sbjct 2942 ATTTGCCAAGCATGTTTTCATTAGTCA-AGAACGAAAGTCAGAGG 2899 >seq749 Length=517955 Score = 190 bits (210), Expect = 4e-46 Identities = 219/285 (77%), Gaps = 11/285 (4%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGC--CGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGT 97 ||| ||| |||| || ||| |||| ||| ||||||||||||||||||||||||||| Sbjct 342529 TGCTCTTGACTGAGT-TGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGT 342471 Query 98 TCAAAGCAGGC-CTTTGCTCGAATACATTAG--CATGGAATAATAGAATAGGACGTGCGG 154 ||||||||||| ||| || | |||| | | ||||||||||| ||||||||| | ||| Sbjct 342470 TCAAAGCAGGCGCTTCGCCTG--TACAATGGTGCATGGAATAATGGAATAGGACCT-CGG 342414 Query 155 TTCTATTTTGTTGGTTTCTAGGAC-CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213 ||||||||||||||||| | || || ||||||||||| ||||| | |||||| | Sbjct 342413 TTCTATTTTGTTGGTTTTCGGAACACGAGGTAATGATTAAGAGGGACTGACGGGGGCATT 342354 Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273 |||| || ||||||||||||||||||| |||| |||| |||||||| Sbjct 342353 CGTATGGCGGGGTTAGAGGTGAAATTCTTGGATCCTCGCCAGACGGCCTACAGCGAAAGC 342294 Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || ||||| |||||||||||| ||| |||||||||| || || Sbjct 342293 ATTTGCCAAGCATGTTTTCATTAGTCA-AGAACGAAAGTCAGAGG 342250 >seq446 Length=2878 Score = 190 bits (210), Expect = 4e-46 Identities = 219/285 (77%), Gaps = 11/285 (4%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGC--CGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGT 97 ||| ||| |||| || ||| |||| ||| ||||||||||||||||||||||||||| Sbjct 2461 TGCTCTTGACTGAGT-TGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGT 2403 Query 98 TCAAAGCAGGC-CTTTGCTCGAATACATTAG--CATGGAATAATAGAATAGGACGTGCGG 154 ||||||||||| ||| || | |||| | | ||||||||||| ||||||||| | ||| Sbjct 2402 TCAAAGCAGGCGCTTCGCCTG--TACAATGGTGCATGGAATAATGGAATAGGACCT-CGG 2346 Query 155 TTCTATTTTGTTGGTTTCTAGGAC-CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213 ||||||||||||||||| | || || ||||||||||| ||||| | |||||| | Sbjct 2345 TTCTATTTTGTTGGTTTTCGGAACACGAGGTAATGATTAAGAGGGACTGACGGGGGCATT 2286 Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273 |||| || ||||||||||||||||||| |||| |||| |||||||| Sbjct 2285 CGTATGGCGGGGTTAGAGGTGAAATTCTTGGATCCTCGCCAGACGGCCTACAGCGAAAGC 2226 Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || ||||| |||||||||||| ||| |||||||||| || || Sbjct 2225 ATTTGCCAAGCATGTTTTCATTAGTCA-AGAACGAAAGTCAGAGG 2182 >seq175 Length=6454 Score = 190 bits (210), Expect = 4e-46 Identities = 219/285 (77%), Gaps = 11/285 (4%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGC--CGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGT 97 ||| ||| |||| || ||| |||| ||| ||||||||||||||||||||||||||| Sbjct 5738 TGCTCTTGACTGAGT-TGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGT 5680 Query 98 TCAAAGCAGGC-CTTTGCTCGAATACATTAG--CATGGAATAATAGAATAGGACGTGCGG 154 ||||||||||| ||| || | |||| | | ||||||||||| ||||||||| | ||| Sbjct 5679 TCAAAGCAGGCGCTTCGCCTG--TACAATGGTGCATGGAATAATGGAATAGGACCT-CGG 5623 Query 155 TTCTATTTTGTTGGTTTCTAGGAC-CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213 ||||||||||||||||| | || || ||||||||||| ||||| | |||||| | Sbjct 5622 TTCTATTTTGTTGGTTTTCGGAACACGAGGTAATGATTAAGAGGGACTGACGGGGGCATT 5563 Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273 |||| || ||||||||||||||||||| |||| |||| |||||||| Sbjct 5562 CGTATGGCGGGGTTAGAGGTGAAATTCTTGGATCCTCGCCAGACGGCCTACAGCGAAAGC 5503 Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || ||||| |||||||||||| ||| |||||||||| || || Sbjct 5502 ATTTGCCAAGCATGTTTTCATTAGTCA-AGAACGAAAGTCAGAGG 5459 >seq5982 Length=2219 Score = 187 bits (206), Expect = 5e-45 Identities = 218/285 (76%), Gaps = 11/285 (4%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGC--CGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGT 97 ||| ||| |||| || ||| |||| ||| ||||||||||||||||||||||||||| Sbjct 663 TGCTCTTGACTGAGT-TGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGT 605 Query 98 TCAAAGCAGGC-CTTTGCTCGAATACATTAG--CATGGAATAATAGAATAGGACGTGCGG 154 ||||||||||| ||| || | |||| | | ||||||||||| ||||||||| | ||| Sbjct 604 TCAAAGCAGGCGCTTCGCCTG--TACAATGGTGCATGGAATAATGGAATAGGACCT-CGG 548 Query 155 TTCTATTTTGTTGGTTTCTAGGAC-CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213 ||||||||||||||||| | || || ||||||||||| ||||| | |||||| | Sbjct 547 TTCTATTTTGTTGGTTTTCGGAACACGAGGTAATGATTAAGAGGGACTGACGGGGGCATT 488 Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273 |||| || ||||| ||||||||||||| |||| |||| |||||||| Sbjct 487 CGTATGGCGGGGTTAGAGGGGAAATTCTTGGATCCTCGCCAGACGGCCTACAGCGAAAGC 428 Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || ||||| |||||||||||| ||| |||||||||| || || Sbjct 427 ATTTGCCAAGCATGTTTTCATTAGTCA-AGAACGAAAGTCAGAGG 384 >seq5508 Length=1343 Score = 141 bits (156), Expect = 2e-31 Identities = 143/177 (81%), Gaps = 12/177 (7%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGC--CGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGT 97 ||| ||| |||| || ||| |||| ||| ||||||||||||||||||||||||||| Sbjct 181 TGCTCTTGACTGAGT-TGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGT 123 Query 98 TCAAAGCAGGC-CTTTGCTCGAATACATT--AGCATGGAATAATAGAATAGGACGTGCGG 154 ||||||||||| ||| || | |||| | |||||||||||| ||||||||| | ||| Sbjct 122 TCAAAGCAGGCGCTTCGCCTG--TACAATGGTGCATGGAATAATGGAATAGGACCT-CGG 66 Query 155 TTCTATTTTGTTGGTTTCTAGGAC--CGCCGTAATGATTAATAGGGATAGTCGGGGG 209 ||||||||||||||||| | |||| || ||||||||||| ||||| | |||||| Sbjct 65 TTCTATTTTGTTGGTTT-TCGGACCACGAGGTAATGATTAAGAGGGACTGACGGGGG 10 >seq5436 Length=1215 Score = 138 bits (152), Expect = 2e-30 Identities = 141/176 (80%), Gaps = 10/176 (6%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGC--CGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGT 97 ||| ||| |||| || ||| |||| ||| ||||||||||||||||||||||||||| Sbjct 1021 TGCTCTTGACTGAGT-TGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGT 1079 Query 98 TCAAAGCAGGC-CTTTGCTCGAATACATT--AGCATGGAATAATAGAATAGGACGTGCGG 154 ||||||||||| ||| || | |||| | |||||||||||| ||||||||| | ||| Sbjct 1080 TCAAAGCAGGCGCTTCGCCTG--TACAATGGTGCATGGAATAATGGAATAGGACCT-CGG 1136 Query 155 TTCTATTTTGTTGGTTTCTAGGAC-CGCCGTAATGATTAATAGGGATAGTCGGGGG 209 ||||||||||||||||| | || || ||||||||||| ||||| | |||||| Sbjct 1137 TTCTATTTTGTTGGTTTTCGGAACACGAGGTAATGATTAAGAGGGACTGACGGGGG 1192 >seq5425 Length=1210 Score = 138 bits (152), Expect = 2e-30 Identities = 141/176 (80%), Gaps = 10/176 (6%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGC--CGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGT 97 ||| ||| |||| || ||| |||| ||| ||||||||||||||||||||||||||| Sbjct 195 TGCTCTTGACTGAGT-TGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGT 137 Query 98 TCAAAGCAGGC-CTTTGCTCGAATACATT--AGCATGGAATAATAGAATAGGACGTGCGG 154 ||||||||||| ||| || | |||| | |||||||||||| ||||||||| | ||| Sbjct 136 TCAAAGCAGGCGCTTCGCCTG--TACAATGGTGCATGGAATAATGGAATAGGACCT-CGG 80 Query 155 TTCTATTTTGTTGGTTTCTAGGAC-CGCCGTAATGATTAATAGGGATAGTCGGGGG 209 ||||||||||||||||| | || || ||||||||||| ||||| | |||||| Sbjct 79 TTCTATTTTGTTGGTTTTCGGAACACGAGGTAATGATTAAGAGGGACTGACGGGGG 24 >seq5646 Length=1532 Score = 73.4 bits (80), Expect = 7e-11 Identities = 60/71 (85%), Gaps = 3/71 (4%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGC--CGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGT 97 ||| ||| |||| || ||| |||| ||| ||||||||||||||||||||||||||| Sbjct 75 TGCTCTTGACTGAGT-TGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGT 17 Query 98 TCAAAGCAGGC 108 ||||||||||| Sbjct 16 TCAAAGCAGGC 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915129904832