Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq6043 187 1e-44 seq6029 187 1e-44 seq5933 187 1e-44 seq5752 187 1e-44 seq4964 187 1e-44 seq2554 187 1e-44 seq175 187 1e-44 seq749 147 9e-33 seq5921 111 7e-22 seq6303 78.8 4e-12 seq6211 78.8 4e-12 >seq6043 Length=2415 Score = 187 bits (206), Expect = 1e-44 Identities = 230/315 (73%), Gaps = 36/315 (11%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCA- 463 || ||||||||| |||||||||||||||||||||||| | || ||| |||||||| | Sbjct 421 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCAAGTCATTGGGTGTTAC 480 Query 464 --AACCCGTGCGCGTAATGAAAGTGAA--------CGG---------AGGTGGGAACC-- 502 |||| |||||||||||||||| ||| |||||||| || Sbjct 481 GAAACCTAAAGGCGTAATGAAAGTGAAGGCAGCCTCGGGTTCTGCCTAGGTGGGATCCTC 540 Query 503 -------CGTGA---GGGTGCACCATCGACCGATCCTGATGTC--TTCG--GATGGATTT 548 || | ||| |||||| || || ||| | | | | || || || Sbjct 541 GGTCCGTCGCGGCCGGGGCGCACCACCGGCCCGTCCCGTTCGCACTGCGTCGAAGGGGCG 600 Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| |||||| || ||||| ||||||||||||||||||||||| ||| |||| ||||| Sbjct 601 GAGCAAGAGCGTACACGTTGGTACCCGAAAGATGGTGAACTATGCTTGAGTAGGATGAAG 660 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||| |||||| ||||||||||||| |||||||||||||||||||| | Sbjct 661 TCAGAGGAAACTCTGATGGAGGTCCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAACT 720 Query 669 TGGGTATAGGGGCGA 683 || | |||||||||| Sbjct 721 TGAGCATAGGGGCGA 735 >seq6029 Length=2359 Score = 187 bits (206), Expect = 1e-44 Identities = 230/315 (73%), Gaps = 36/315 (11%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCA- 463 || ||||||||| |||||||||||||||||||||||| | || ||| |||||||| | Sbjct 1999 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCAAGTCATTGGGTGTTAC 1940 Query 464 --AACCCGTGCGCGTAATGAAAGTGAA--------CGG---------AGGTGGGAACC-- 502 |||| |||||||||||||||| ||| |||||||| || Sbjct 1939 GAAACCTAAAGGCGTAATGAAAGTGAAGGCAGCCTCGGGTTCTGCCTAGGTGGGATCCTC 1880 Query 503 -------CGTGA---GGGTGCACCATCGACCGATCCTGATGTC--TTCG--GATGGATTT 548 || | ||| |||||| || || ||| | | | | || || || Sbjct 1879 GGTCCGTCGCGGCCGGGGCGCACCACCGGCCCGTCCCGTTCGCACTGCGTCGAAGGGGCG 1820 Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| |||||| || ||||| ||||||||||||||||||||||| ||| |||| ||||| Sbjct 1819 GAGCAAGAGCGTACACGTTGGTACCCGAAAGATGGTGAACTATGCTTGAGTAGGATGAAG 1760 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||| |||||| ||||||||||||| |||||||||||||||||||| | Sbjct 1759 TCAGAGGAAACTCTGATGGAGGTCCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAACT 1700 Query 669 TGGGTATAGGGGCGA 683 || | |||||||||| Sbjct 1699 TGAGCATAGGGGCGA 1685 >seq5933 Length=2128 Score = 187 bits (206), Expect = 1e-44 Identities = 230/315 (73%), Gaps = 36/315 (11%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCA- 463 || ||||||||| |||||||||||||||||||||||| | || ||| |||||||| | Sbjct 1581 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCAAGTCATTGGGTGTTAC 1522 Query 464 --AACCCGTGCGCGTAATGAAAGTGAA--------CGG---------AGGTGGGAACC-- 502 |||| |||||||||||||||| ||| |||||||| || Sbjct 1521 GAAACCTAAAGGCGTAATGAAAGTGAAGGCAGCCTCGGGTTCTGCCTAGGTGGGATCCTC 1462 Query 503 -------CGTGA---GGGTGCACCATCGACCGATCCTGATGTC--TTCG--GATGGATTT 548 || | ||| |||||| || || ||| | | | | || || || Sbjct 1461 GGTCCGTCGCGGCCGGGGCGCACCACCGGCCCGTCCCGTTCGCACTGCGTCGAAGGGGCG 1402 Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| |||||| || ||||| ||||||||||||||||||||||| ||| |||| ||||| Sbjct 1401 GAGCAAGAGCGTACACGTTGGTACCCGAAAGATGGTGAACTATGCTTGAGTAGGATGAAG 1342 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||| |||||| ||||||||||||| |||||||||||||||||||| | Sbjct 1341 TCAGAGGAAACTCTGATGGAGGTCCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAACT 1282 Query 669 TGGGTATAGGGGCGA 683 || | |||||||||| Sbjct 1281 TGAGCATAGGGGCGA 1267 >seq5752 Length=1816 Score = 187 bits (206), Expect = 1e-44 Identities = 230/315 (73%), Gaps = 36/315 (11%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCA- 463 || ||||||||| |||||||||||||||||||||||| | || ||| |||||||| | Sbjct 449 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCAAGTCATTGGGTGTTAC 508 Query 464 --AACCCGTGCGCGTAATGAAAGTGAA--------CGG---------AGGTGGGAACC-- 502 |||| |||||||||||||||| ||| |||||||| || Sbjct 509 GAAACCTAAAGGCGTAATGAAAGTGAAGGCAGCCTCGGGTTCTGCCTAGGTGGGATCCTC 568 Query 503 -------CGTGA---GGGTGCACCATCGACCGATCCTGATGTC--TTCG--GATGGATTT 548 || | ||| |||||| || || ||| | | | | || || || Sbjct 569 GGTCCGTCGCGGCCGGGGCGCACCACCGGCCCGTCCCGTTCGCACTGCGTCGAAGGGGCG 628 Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| |||||| || ||||| ||||||||||||||||||||||| ||| |||| ||||| Sbjct 629 GAGCAAGAGCGTACACGTTGGTACCCGAAAGATGGTGAACTATGCTTGAGTAGGATGAAG 688 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||| |||||| ||||||||||||| |||||||||||||||||||| | Sbjct 689 TCAGAGGAAACTCTGATGGAGGTCCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAACT 748 Query 669 TGGGTATAGGGGCGA 683 || | |||||||||| Sbjct 749 TGAGCATAGGGGCGA 763 >seq4964 Length=611 Score = 187 bits (206), Expect = 1e-44 Identities = 230/315 (73%), Gaps = 36/315 (11%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCA- 463 || ||||||||| |||||||||||||||||||||||| | || ||| |||||||| | Sbjct 240 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCAAGTCATTGGGTGTTAC 299 Query 464 --AACCCGTGCGCGTAATGAAAGTGAA--------CGG---------AGGTGGGAACC-- 502 |||| |||||||||||||||| ||| |||||||| || Sbjct 300 GAAACCTAAAGGCGTAATGAAAGTGAAGGCAGCCTCGGGTTCTGCCTAGGTGGGATCCTC 359 Query 503 -------CGTGA---GGGTGCACCATCGACCGATCCTGATGTC--TTCG--GATGGATTT 548 || | ||| |||||| || || ||| | | | | || || || Sbjct 360 GGTCCGTCGCGGCCGGGGCGCACCACCGGCCCGTCCCGTTCGCACTGCGTCGAAGGGGCG 419 Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| |||||| || ||||| ||||||||||||||||||||||| ||| |||| ||||| Sbjct 420 GAGCAAGAGCGTACACGTTGGTACCCGAAAGATGGTGAACTATGCTTGAGTAGGATGAAG 479 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||| |||||| ||||||||||||| |||||||||||||||||||| | Sbjct 480 TCAGAGGAAACTCTGATGGAGGTCCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAACT 539 Query 669 TGGGTATAGGGGCGA 683 || | |||||||||| Sbjct 540 TGAGCATAGGGGCGA 554 >seq2554 Length=3356 Score = 187 bits (206), Expect = 1e-44 Identities = 230/315 (73%), Gaps = 36/315 (11%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCA- 463 || ||||||||| |||||||||||||||||||||||| | || ||| |||||||| | Sbjct 1008 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCAAGTCATTGGGTGTTAC 949 Query 464 --AACCCGTGCGCGTAATGAAAGTGAA--------CGG---------AGGTGGGAACC-- 502 |||| |||||||||||||||| ||| |||||||| || Sbjct 948 GAAACCTAAAGGCGTAATGAAAGTGAAGGCAGCCTCGGGTTCTGCCTAGGTGGGATCCTC 889 Query 503 -------CGTGA---GGGTGCACCATCGACCGATCCTGATGTC--TTCG--GATGGATTT 548 || | ||| |||||| || || ||| | | | | || || || Sbjct 888 GGTCCGTCGCGGCCGGGGCGCACCACCGGCCCGTCCCGTTCGCACTGCGTCGAAGGGGCG 829 Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| |||||| || ||||| ||||||||||||||||||||||| ||| |||| ||||| Sbjct 828 GAGCAAGAGCGTACACGTTGGTACCCGAAAGATGGTGAACTATGCTTGAGTAGGATGAAG 769 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||| |||||| ||||||||||||| |||||||||||||||||||| | Sbjct 768 TCAGAGGAAACTCTGATGGAGGTCCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAACT 709 Query 669 TGGGTATAGGGGCGA 683 || | |||||||||| Sbjct 708 TGAGCATAGGGGCGA 694 >seq175 Length=6454 Score = 187 bits (206), Expect = 1e-44 Identities = 230/315 (73%), Gaps = 36/315 (11%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCA- 463 || ||||||||| |||||||||||||||||||||||| | || ||| |||||||| | Sbjct 2648 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCAAGTCATTGGGTGTTAC 2589 Query 464 --AACCCGTGCGCGTAATGAAAGTGAA--------CGG---------AGGTGGGAACC-- 502 |||| |||||||||||||||| ||| |||||||| || Sbjct 2588 GAAACCTAAAGGCGTAATGAAAGTGAAGGCAGCCTCGGGTTCTGCCTAGGTGGGATCCTC 2529 Query 503 -------CGTGA---GGGTGCACCATCGACCGATCCTGATGTC--TTCG--GATGGATTT 548 || | ||| |||||| || || ||| | | | | || || || Sbjct 2528 GGTCCGTCGCGGCCGGGGCGCACCACCGGCCCGTCCCGTTCGCACTGCGTCGAAGGGGCG 2469 Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| |||||| || ||||| ||||||||||||||||||||||| ||| |||| ||||| Sbjct 2468 GAGCAAGAGCGTACACGTTGGTACCCGAAAGATGGTGAACTATGCTTGAGTAGGATGAAG 2409 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||| |||||| ||||||||||||| |||||||||||||||||||| | Sbjct 2408 TCAGAGGAAACTCTGATGGAGGTCCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAACT 2349 Query 669 TGGGTATAGGGGCGA 683 || | |||||||||| Sbjct 2348 TGAGCATAGGGGCGA 2334 >seq749 Length=517955 Score = 147 bits (162), Expect = 9e-33 Identities = 204/286 (71%), Gaps = 36/286 (13%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCA- 463 || ||||||||| |||||||||||||||||||||||| | || ||| |||||||| | Sbjct 339423 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCAAGTCATTGGGTGTTAC 339364 Query 464 --AACCCGTGCGCGTAATGAAAGTGAA--------CGG---------AGGTGGGAACC-- 502 |||| |||||||||||||||| ||| |||||||| || Sbjct 339363 GAAACCTAAAGGCGTAATGAAAGTGAAGGCAGCCTCGGGTTCTGCCTAGGTGGGATCCTC 339304 Query 503 -------CGTGA---GGGTGCACCATCGACCGATCCTGATGTC--TTCG--GATGGATTT 548 || | ||| |||||| || || ||| | | | | || || || Sbjct 339303 GGTCCGTCGCGGCCGGGGCGCACCACCGGCCCGTCCCGTTCGCACTGCGTCGAAGGGGCG 339244 Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| |||||| || ||||| ||||||||||||||||||||||| ||| |||| ||||| Sbjct 339243 GAGCAAGAGCGTACACGTTGGTACCCGAAAGATGGTGAACTATGCTTGAGTAGGATGAAG 339184 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAA 654 |||||||||||||| |||||| ||||||||||||| |||||||| Sbjct 339183 TCAGAGGAAACTCTGATGGAGGTCCGCAGCGGTTCTGACGTGCAAA 339138 >seq5921 Length=2088 Score = 111 bits (122), Expect = 7e-22 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 600 AGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGAT 659 ||| ||||| |||||||||||||| |||||| ||||||||||||| ||||||||||||| Sbjct 2088 AGGATGAAGTCAGAGGAAACTCTGATGGAGGTCCGCAGCGGTTCTGACGTGCAAATCGAT 2029 Query 660 CGTCAAATTTGGGTATAGGGGCGA 683 ||||||| ||| | |||||||||| Sbjct 2028 CGTCAAACTTGAGCATAGGGGCGA 2005 >seq6303 Length=3216 Score = 78.8 bits (86), Expect = 4e-12 Identities = 70/87 (80%), Gaps = 3/87 (3%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGT--- 461 || ||||||||| |||||||||||||||||||||||| | || ||| |||||||| Sbjct 88 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCAAGTCATTGGGTGTTAC 29 Query 462 CAAACCCGTGCGCGTAATGAAAGTGAA 488 ||||| |||||||||||||||| Sbjct 28 GAAACCTAAAGGCGTAATGAAAGTGAA 2 >seq6211 Length=2874 Score = 78.8 bits (86), Expect = 4e-12 Identities = 70/87 (80%), Gaps = 3/87 (3%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGT--- 461 || ||||||||| |||||||||||||||||||||||| | || ||| |||||||| Sbjct 119 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCAAGTCATTGGGTGTTAC 60 Query 462 CAAACCCGTGCGCGTAATGAAAGTGAA 488 ||||| |||||||||||||||| Sbjct 59 GAAACCTAAAGGCGTAATGAAAGTGAA 33 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079835714450