Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq6085 298 9e-79 seq6303 282 7e-74 seq6211 282 7e-74 seq6052 282 7e-74 seq749 282 7e-74 seq446 282 7e-74 seq175 282 7e-74 seq5982 179 6e-43 seq2806 167 4e-39 >seq6085 Length=2588 Score = 298 bits (330), Expect = 9e-79 Identities = 223/259 (86%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 242 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 301 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | || ||| | ||||||||||||||||| ||| Sbjct 302 CCTGTTATTGCCTCAAACTTCCGCGGCCTAAAAGGCCGTAGTCCCTCTAAGAAGCTGGCC 361 Query 122 ACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | || ||| || |||| |||||||| | ||||||||||||||| ||||||| Sbjct 362 GCGAAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 421 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 422 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 481 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| ||| |||||| Sbjct 482 AAAGAGCTCTCAGTCTGTC 500 >seq6303 Length=3216 Score = 282 bits (312), Expect = 7e-74 Identities = 216/249 (87%), Gaps = 5/249 (2%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 2407 TCCTTCAGTGTAGCGCGCGTGCGGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG 2466 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG-CCACCAACCAT 130 | |||| || | ||||| | |||| | |||||||||||||| | || || | || Sbjct 2467 C-TCAATCT-CGTGTGGCTAAACGCCACTTGTCCCTCTAAGAAGTTACACCGACAGCAAT 2524 Query 131 AG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 || ||| || |||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 2525 AGATCGGTGAA-CTATTTAGTAGGTTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAA 2583 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 2584 ATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACCGAATCAAGAAAGAGCTCT 2643 Query 250 CAATCTGTC 258 ||||||||| Sbjct 2644 CAATCTGTC 2652 >seq6211 Length=2874 Score = 282 bits (312), Expect = 7e-74 Identities = 216/249 (87%), Gaps = 5/249 (2%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 2439 TCCTTCAGTGTAGCGCGCGTGCGGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG 2498 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG-CCACCAACCAT 130 | |||| || | ||||| | |||| | |||||||||||||| | || || | || Sbjct 2499 C-TCAATCT-CGTGTGGCTAAACGCCACTTGTCCCTCTAAGAAGTTACACCGACAGCAAT 2556 Query 131 AG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 || ||| || |||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 2557 AGATCGGTGAA-CTATTTAGTAGGTTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAA 2615 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 2616 ATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACCGAATCAAGAAAGAGCTCT 2675 Query 250 CAATCTGTC 258 ||||||||| Sbjct 2676 CAATCTGTC 2684 >seq6052 Length=2439 Score = 282 bits (312), Expect = 7e-74 Identities = 216/249 (87%), Gaps = 5/249 (2%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 368 TCCTTCAGTGTAGCGCGCGTGCGGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG 309 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG-CCACCAACCAT 130 | |||| || | ||||| | |||| | |||||||||||||| | || || | || Sbjct 308 C-TCAATCT-CGTGTGGCTAAACGCCACTTGTCCCTCTAAGAAGTTACACCGACAGCAAT 251 Query 131 AG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 || ||| || |||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 250 AGATCGGTGAA-CTATTTAGTAGGTTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAA 192 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 191 ATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACCGAATCAAGAAAGAGCTCT 132 Query 250 CAATCTGTC 258 ||||||||| Sbjct 131 CAATCTGTC 123 >seq749 Length=517955 Score = 282 bits (312), Expect = 7e-74 Identities = 216/249 (87%), Gaps = 5/249 (2%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 341758 TCCTTCAGTGTAGCGCGCGTGCGGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG 341817 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG-CCACCAACCAT 130 | |||| || | ||||| | |||| | |||||||||||||| | || || | || Sbjct 341818 C-TCAATCT-CGTGTGGCTAAACGCCACTTGTCCCTCTAAGAAGTTACACCGACAGCAAT 341875 Query 131 AG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 || ||| || |||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 341876 AGATCGGTGAA-CTATTTAGTAGGTTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAA 341934 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 341935 ATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACCGAATCAAGAAAGAGCTCT 341994 Query 250 CAATCTGTC 258 ||||||||| Sbjct 341995 CAATCTGTC 342003 >seq446 Length=2878 Score = 282 bits (312), Expect = 7e-74 Identities = 216/249 (87%), Gaps = 5/249 (2%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1690 TCCTTCAGTGTAGCGCGCGTGCGGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG 1749 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG-CCACCAACCAT 130 | |||| || | ||||| | |||| | |||||||||||||| | || || | || Sbjct 1750 C-TCAATCT-CGTGTGGCTAAACGCCACTTGTCCCTCTAAGAAGTTACACCGACAGCAAT 1807 Query 131 AG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 || ||| || |||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 1808 AGATCGGTGAA-CTATTTAGTAGGTTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAA 1866 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 1867 ATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACCGAATCAAGAAAGAGCTCT 1926 Query 250 CAATCTGTC 258 ||||||||| Sbjct 1927 CAATCTGTC 1935 >seq175 Length=6454 Score = 282 bits (312), Expect = 7e-74 Identities = 216/249 (87%), Gaps = 5/249 (2%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 4967 TCCTTCAGTGTAGCGCGCGTGCGGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG 5026 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG-CCACCAACCAT 130 | |||| || | ||||| | |||| | |||||||||||||| | || || | || Sbjct 5027 C-TCAATCT-CGTGTGGCTAAACGCCACTTGTCCCTCTAAGAAGTTACACCGACAGCAAT 5084 Query 131 AG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 || ||| || |||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 5085 AGATCGGTGAA-CTATTTAGTAGGTTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAA 5143 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 5144 ATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACCGAATCAAGAAAGAGCTCT 5203 Query 250 CAATCTGTC 258 ||||||||| Sbjct 5204 CAATCTGTC 5212 >seq5982 Length=2219 Score = 179 bits (198), Expect = 6e-43 Identities = 110/117 (94%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||| Sbjct 21 CTATTTAGTAGGTTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 80 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct 81 ACTAAGAACGGCCATGCACCACCACCCACCGAATCAAGAAAGAGCTCTCAATCTGTC 137 >seq2806 Length=495214 Score = 167 bits (184), Expect = 4e-39 Identities = 107/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct 207084 CTATTTAGTAGGTTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATTGCTCCACCA 207025 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||| ||||| ||||||||||| |||||||||||||||| |||||||||| Sbjct 207024 ACTAAGAACGCCCATGTACCACCACCCACCGAATCAAGAAAGAGCTCTCAATCTGTC 206968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796740880179