Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq5921 82.4 1e-13 seq5867 82.4 1e-13 seq5467 82.4 1e-13 seq5377 82.4 1e-13 seq5253 82.4 1e-13 seq5183 82.4 1e-13 seq175 82.4 1e-13 seq5677 78.8 2e-12 >seq5921 Length=2088 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||||||| |||| ||||||||||||||||| | || |||| |||||| ||| | Sbjct 219 GACAGTGTCAGGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAACGGTAACGCAGGTG 160 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAG 226 || ||| | |||||| ||| ||||||| ||| | ||| || |||||||| Sbjct 159 TCCTAAGGTGAGCTCAGCGAGGACGGAAACCTCGCGTAGAGTAAAAGGGCAAAAG 105 >seq5867 Length=1991 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||||||| |||| ||||||||||||||||| | || |||| |||||| ||| | Sbjct 1800 GACAGTGTCAGGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAACGGTAACGCAGGTG 1741 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAG 226 || ||| | |||||| ||| ||||||| ||| | ||| || |||||||| Sbjct 1740 TCCTAAGGTGAGCTCAGCGAGGACGGAAACCTCGCGTAGAGTAAAAGGGCAAAAG 1686 >seq5467 Length=1275 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||||||| |||| ||||||||||||||||| | || |||| |||||| ||| | Sbjct 104 GACAGTGTCAGGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAACGGTAACGCAGGTG 163 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAG 226 || ||| | |||||| ||| ||||||| ||| | ||| || |||||||| Sbjct 164 TCCTAAGGTGAGCTCAGCGAGGACGGAAACCTCGCGTAGAGTAAAAGGGCAAAAG 218 >seq5377 Length=1104 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||||||| |||| ||||||||||||||||| | || |||| |||||| ||| | Sbjct 1074 GACAGTGTCAGGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAACGGTAACGCAGGTG 1015 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAG 226 || ||| | |||||| ||| ||||||| ||| | ||| || |||||||| Sbjct 1014 TCCTAAGGTGAGCTCAGCGAGGACGGAAACCTCGCGTAGAGTAAAAGGGCAAAAG 960 >seq5253 Length=910 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||||||| |||| ||||||||||||||||| | || |||| |||||| ||| | Sbjct 336 GACAGTGTCAGGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAACGGTAACGCAGGTG 395 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAG 226 || ||| | |||||| ||| ||||||| ||| | ||| || |||||||| Sbjct 396 TCCTAAGGTGAGCTCAGCGAGGACGGAAACCTCGCGTAGAGTAAAAGGGCAAAAG 450 >seq5183 Length=818 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||||||| |||| ||||||||||||||||| | || |||| |||||| ||| | Sbjct 605 GACAGTGTCAGGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAACGGTAACGCAGGTG 664 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAG 226 || ||| | |||||| ||| ||||||| ||| | ||| || |||||||| Sbjct 665 TCCTAAGGTGAGCTCAGCGAGGACGGAAACCTCGCGTAGAGTAAAAGGGCAAAAG 719 >seq175 Length=6454 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||||||| |||| ||||||||||||||||| | || |||| |||||| ||| | Sbjct 542 GACAGTGTCAGGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAACGGTAACGCAGGTG 483 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAG 226 || ||| | |||||| ||| ||||||| ||| | ||| || |||||||| Sbjct 482 TCCTAAGGTGAGCTCAGCGAGGACGGAAACCTCGCGTAGAGTAAAAGGGCAAAAG 428 >seq5677 Length=1681 Score = 78.8 bits (86), Expect = 2e-12 Identities = 87/115 (76%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171 |||||||||| |||| ||||||||||||||||| | || |||| |||||| ||| | Sbjct 1656 GACAGTGTCATGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAACGGTAACGCAGGTG 1597 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAG 226 || ||| | |||||| ||| ||||||| ||| | ||| || |||||||| Sbjct 1596 TCCTAAGGTGAGCTCAGCGAGGACGGAAACCTCGCGTAGAGTAAAAGGGCAAAAG 1542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982324757984