Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq6303 91.5 9e-17 seq6211 91.5 9e-17 seq6052 91.5 9e-17 seq749 91.5 9e-17 seq446 91.5 9e-17 seq175 91.5 9e-17 seq2554 86.0 4e-15 seq6085 75.2 7e-12 >seq6303 Length=3216 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 2213 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 2270 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 2271 TAAT-CAACGCGAGCT 2285 >seq6211 Length=2874 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 2245 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 2302 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 2303 TAAT-CAACGCGAGCT 2317 >seq6052 Length=2439 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 562 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 505 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 504 TAAT-CAACGCGAGCT 490 >seq749 Length=517955 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 341564 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 341621 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 341622 TAAT-CAACGCGAGCT 341636 >seq446 Length=2878 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 1496 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 1553 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 1554 TAAT-CAACGCGAGCT 1568 >seq175 Length=6454 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 4773 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 4830 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 4831 TAAT-CAACGCGAGCT 4845 >seq2554 Length=3356 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || |||| |||| ||||||||||| |||||||||||||||||||| Sbjct 3180 CTCACTAAACCATC-CAATCGGGAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 3237 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 3238 TAAT-CAACGCGAGCT 3252 >seq6085 Length=2588 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 70 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 127 Query 122 GCT 124 ||| Sbjct 128 GCT 130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300778401620