Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq6303 95.1 1e-17 seq5982 95.1 1e-17 seq5508 95.1 1e-17 seq5436 95.1 1e-17 seq5425 95.1 1e-17 seq749 95.1 1e-17 seq446 95.1 1e-17 seq175 95.1 1e-17 seq6085 75.2 1e-11 >seq6303 Length=3216 Score = 95.1 bits (104), Expect = 1e-17 Identities = 86/104 (83%), Gaps = 6/104 (6%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCT--AATGTATTCGGG 67 ||||||||||||||| || | ||||||||| |||||||||||| | |||| | || Sbjct 3046 AAACCAACAAAATAGAACCG-AGGTCCTATTCCATTATTCCATGCACCATTGTA--CAGG 3102 Query 68 CGTAA-GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110 || | |||||||||||||||||||||||| |||| |||||||| Sbjct 3103 CGAAGCGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGT 3146 >seq5982 Length=2219 Score = 95.1 bits (104), Expect = 1e-17 Identities = 86/104 (83%), Gaps = 6/104 (6%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCT--AATGTATTCGGG 67 ||||||||||||||| || | ||||||||| |||||||||||| | |||| | || Sbjct 531 AAACCAACAAAATAGAACCG-AGGTCCTATTCCATTATTCCATGCACCATTGTA--CAGG 587 Query 68 CGTAA-GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110 || | |||||||||||||||||||||||| |||| |||||||| Sbjct 588 CGAAGCGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGT 631 >seq5508 Length=1343 Score = 95.1 bits (104), Expect = 1e-17 Identities = 86/104 (83%), Gaps = 6/104 (6%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCT--AATGTATTCGGG 67 ||||||||||||||| || | ||||||||| |||||||||||| | |||| | || Sbjct 49 AAACCAACAAAATAGAACCG-AGGTCCTATTCCATTATTCCATGCACCATTGTA--CAGG 105 Query 68 CGTAA-GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110 || | |||||||||||||||||||||||| |||| |||||||| Sbjct 106 CGAAGCGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGT 149 >seq5436 Length=1215 Score = 95.1 bits (104), Expect = 1e-17 Identities = 86/104 (83%), Gaps = 6/104 (6%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCT--AATGTATTCGGG 67 ||||||||||||||| || | ||||||||| |||||||||||| | |||| | || Sbjct 1153 AAACCAACAAAATAGAACCG-AGGTCCTATTCCATTATTCCATGCACCATTGTA--CAGG 1097 Query 68 CGTAA-GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110 || | |||||||||||||||||||||||| |||| |||||||| Sbjct 1096 CGAAGCGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGT 1053 >seq5425 Length=1210 Score = 95.1 bits (104), Expect = 1e-17 Identities = 86/104 (83%), Gaps = 6/104 (6%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCT--AATGTATTCGGG 67 ||||||||||||||| || | ||||||||| |||||||||||| | |||| | || Sbjct 63 AAACCAACAAAATAGAACCG-AGGTCCTATTCCATTATTCCATGCACCATTGTA--CAGG 119 Query 68 CGTAA-GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110 || | |||||||||||||||||||||||| |||| |||||||| Sbjct 120 CGAAGCGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGT 163 >seq749 Length=517955 Score = 95.1 bits (104), Expect = 1e-17 Identities = 86/104 (83%), Gaps = 6/104 (6%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCT--AATGTATTCGGG 67 ||||||||||||||| || | ||||||||| |||||||||||| | |||| | || Sbjct 342397 AAACCAACAAAATAGAACCG-AGGTCCTATTCCATTATTCCATGCACCATTGTA--CAGG 342453 Query 68 CGTAA-GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110 || | |||||||||||||||||||||||| |||| |||||||| Sbjct 342454 CGAAGCGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGT 342497 >seq446 Length=2878 Score = 95.1 bits (104), Expect = 1e-17 Identities = 86/104 (83%), Gaps = 6/104 (6%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCT--AATGTATTCGGG 67 ||||||||||||||| || | ||||||||| |||||||||||| | |||| | || Sbjct 2329 AAACCAACAAAATAGAACCG-AGGTCCTATTCCATTATTCCATGCACCATTGTA--CAGG 2385 Query 68 CGTAA-GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110 || | |||||||||||||||||||||||| |||| |||||||| Sbjct 2386 CGAAGCGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGT 2429 >seq175 Length=6454 Score = 95.1 bits (104), Expect = 1e-17 Identities = 86/104 (83%), Gaps = 6/104 (6%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCT--AATGTATTCGGG 67 ||||||||||||||| || | ||||||||| |||||||||||| | |||| | || Sbjct 5606 AAACCAACAAAATAGAACCG-AGGTCCTATTCCATTATTCCATGCACCATTGTA--CAGG 5662 Query 68 CGTAA-GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110 || | |||||||||||||||||||||||| |||| |||||||| Sbjct 5663 CGAAGCGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGT 5706 >seq6085 Length=2588 Score = 75.2 bits (82), Expect = 1e-11 Identities = 77/98 (79%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 ||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 895 CCAACGTAATAGGACCGAAA-TCCTATAATGTTATCCCATGCTAATGTATACAGAGCGTA 953 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 954 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595155838206