Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq6085 127 2e-27 seq6303 122 9e-26 seq749 122 9e-26 seq446 122 9e-26 seq175 122 9e-26 seq5982 118 1e-24 seq5508 114 1e-23 seq5436 109 6e-22 seq5425 109 6e-22 >seq6085 Length=2588 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 991 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 932 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| || || | ||| || ||||||| Sbjct 931 GGGATAACATTATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGA-GTAATGA 874 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 873 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 814 Query 190 T 190 | Sbjct 813 T 813 >seq6303 Length=3216 Score = 122 bits (134), Expect = 9e-26 Identities = 140/181 (77%), Gaps = 8/181 (4%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATT--AC 66 |||||||||||||||||||||||| ||||||||||||| ||| || | |||| | Sbjct 3146 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCGCTTCGCCTG--TACAATGGTG 3089 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC-CCGTA 125 ||||||||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||| Sbjct 3088 CATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACACGAGGTA 3031 Query 126 ATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||||| || | ||| | |||||| | |||| || | |||||||||||||||| Sbjct 3030 ATGATTAAGAGGGACTGACGGGGGCATTCGTATGGCGGGGTTAGAGGTGAAATTCTTGGA 2971 Query 186 T 186 | Sbjct 2970 T 2970 >seq749 Length=517955 Score = 122 bits (134), Expect = 9e-26 Identities = 140/181 (77%), Gaps = 8/181 (4%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATT--AC 66 |||||||||||||||||||||||| ||||||||||||| ||| || | |||| | Sbjct 342497 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCGCTTCGCCTG--TACAATGGTG 342440 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC-CCGTA 125 ||||||||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||| Sbjct 342439 CATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACACGAGGTA 342382 Query 126 ATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||||| || | ||| | |||||| | |||| || | |||||||||||||||| Sbjct 342381 ATGATTAAGAGGGACTGACGGGGGCATTCGTATGGCGGGGTTAGAGGTGAAATTCTTGGA 342322 Query 186 T 186 | Sbjct 342321 T 342321 >seq446 Length=2878 Score = 122 bits (134), Expect = 9e-26 Identities = 140/181 (77%), Gaps = 8/181 (4%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATT--AC 66 |||||||||||||||||||||||| ||||||||||||| ||| || | |||| | Sbjct 2429 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCGCTTCGCCTG--TACAATGGTG 2372 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC-CCGTA 125 ||||||||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||| Sbjct 2371 CATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACACGAGGTA 2314 Query 126 ATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||||| || | ||| | |||||| | |||| || | |||||||||||||||| Sbjct 2313 ATGATTAAGAGGGACTGACGGGGGCATTCGTATGGCGGGGTTAGAGGTGAAATTCTTGGA 2254 Query 186 T 186 | Sbjct 2253 T 2253 >seq175 Length=6454 Score = 122 bits (134), Expect = 9e-26 Identities = 140/181 (77%), Gaps = 8/181 (4%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATT--AC 66 |||||||||||||||||||||||| ||||||||||||| ||| || | |||| | Sbjct 5706 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCGCTTCGCCTG--TACAATGGTG 5649 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC-CCGTA 125 ||||||||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||| Sbjct 5648 CATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACACGAGGTA 5591 Query 126 ATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||||| || | ||| | |||||| | |||| || | |||||||||||||||| Sbjct 5590 ATGATTAAGAGGGACTGACGGGGGCATTCGTATGGCGGGGTTAGAGGTGAAATTCTTGGA 5531 Query 186 T 186 | Sbjct 5530 T 5530 >seq5982 Length=2219 Score = 118 bits (130), Expect = 1e-24 Identities = 139/181 (77%), Gaps = 8/181 (4%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATT--AC 66 |||||||||||||||||||||||| ||||||||||||| ||| || | |||| | Sbjct 631 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCGCTTCGCCTG--TACAATGGTG 574 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC-CCGTA 125 ||||||||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||| Sbjct 573 CATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACACGAGGTA 516 Query 126 ATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||||| || | ||| | |||||| | |||| || | ||| |||||||||||| Sbjct 515 ATGATTAAGAGGGACTGACGGGGGCATTCGTATGGCGGGGTTAGAGGGGAAATTCTTGGA 456 Query 186 T 186 | Sbjct 455 T 455 >seq5508 Length=1343 Score = 114 bits (126), Expect = 1e-23 Identities = 116/144 (81%), Gaps = 8/144 (6%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATT--AC 66 |||||||||||||||||||||||| ||||||||||||| ||| || | |||| | Sbjct 149 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCGCTTCGCCTG--TACAATGGTG 92 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC-CCGTA 125 ||||||||||| ||||||||| | |||||||||||||| ||||| | ||||| | ||| Sbjct 91 CATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGACCACGAGGTA 34 Query 126 ATGATAAATACGGATAGTCGGGGG 149 ||||| || | ||| | |||||| Sbjct 33 ATGATTAAGAGGGACTGACGGGGG 10 >seq5436 Length=1215 Score = 109 bits (120), Expect = 6e-22 Identities = 115/144 (80%), Gaps = 8/144 (6%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATT--AC 66 |||||||||||||||||||||||| ||||||||||||| ||| || | |||| | Sbjct 1053 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCGCTTCGCCTG--TACAATGGTG 1110 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC-CCGTA 125 ||||||||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||| Sbjct 1111 CATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACACGAGGTA 1168 Query 126 ATGATAAATACGGATAGTCGGGGG 149 ||||| || | ||| | |||||| Sbjct 1169 ATGATTAAGAGGGACTGACGGGGG 1192 >seq5425 Length=1210 Score = 109 bits (120), Expect = 6e-22 Identities = 115/144 (80%), Gaps = 8/144 (6%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATT--AC 66 |||||||||||||||||||||||| ||||||||||||| ||| || | |||| | Sbjct 163 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCGCTTCGCCTG--TACAATGGTG 106 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC-CCGTA 125 ||||||||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||| Sbjct 105 CATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACACGAGGTA 48 Query 126 ATGATAAATACGGATAGTCGGGGG 149 ||||| || | ||| | |||||| Sbjct 47 ATGATTAAGAGGGACTGACGGGGG 24 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511962011360