Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq6085 309 6e-82 seq6303 199 7e-49 seq6211 199 7e-49 seq6052 199 7e-49 seq749 199 7e-49 seq446 199 7e-49 seq175 199 7e-49 seq2554 102 2e-19 >seq6085 Length=2588 Score = 309 bits (342), Expect = 6e-82 Identities = 262/318 (82%), Gaps = 16/318 (5%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCG------CTTTGGCGGGTCGCCGGCT 73 || |||||||| | |||||||| |||| | || | || |||| || ||| Sbjct 409 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTATCCCTTCGCGG----CCAGCT 354 Query 74 TCTTAGAGGGACTATCGGC---TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| |||| | | |||| |||||||||||||||||||||||||||| Sbjct 353 TCTTAGAGGGACTA-CGGCCTTTTAGGCCGC-GGAAGTTTGAGGCAATAACAGGTCTGTG 296 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||||||||||||||||||||||||||| | ||||||||| || Sbjct 295 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTTTATAG 236 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||||||||| ||| | |||||||||| | ||| | ||||| |||||||||| ||||| Sbjct 235 CCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTG 177 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| | Sbjct 176 CAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACT 117 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 116 ACGTCCCTGCCCTTTGTA 99 >seq6303 Length=3216 Score = 199 bits (220), Expect = 7e-49 Identities = 202/258 (78%), Gaps = 4/258 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 2508 CTTCTTAGAGGGACAAGTGGCGTTTAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 2451 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||| ||||||||||||||||||||||| || |||| || | Sbjct 2450 ATGCCCTTAGATGTTCGGGGCCGCACGCGCGCTACACTGAAGGAATCAACAGGTCTCTGT 2391 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| | ||| |||| |||||| | | || ||| ||||||| ||||| | | || Sbjct 2390 CCTGGCCCGAAAGGGTCGGGTAACCCGTTGAACCTCCTTCGTGCTAGGGATTGGGGTGTG 2331 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||| | | | | |||||||||| || |||||||||| ||||||||| |||||||||| Sbjct 2330 TAATT-CTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATCAGCTCGCGTTGATT 2272 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 2271 ACGTCCCTGCCCTTTGTA 2254 >seq6211 Length=2874 Score = 199 bits (220), Expect = 7e-49 Identities = 202/258 (78%), Gaps = 4/258 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 2540 CTTCTTAGAGGGACAAGTGGCGTTTAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 2483 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||| ||||||||||||||||||||||| || |||| || | Sbjct 2482 ATGCCCTTAGATGTTCGGGGCCGCACGCGCGCTACACTGAAGGAATCAACAGGTCTCTGT 2423 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| | ||| |||| |||||| | | || ||| ||||||| ||||| | | || Sbjct 2422 CCTGGCCCGAAAGGGTCGGGTAACCCGTTGAACCTCCTTCGTGCTAGGGATTGGGGTGTG 2363 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||| | | | | |||||||||| || |||||||||| ||||||||| |||||||||| Sbjct 2362 TAATT-CTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATCAGCTCGCGTTGATT 2304 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 2303 ACGTCCCTGCCCTTTGTA 2286 >seq6052 Length=2439 Score = 199 bits (220), Expect = 7e-49 Identities = 202/258 (78%), Gaps = 4/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 267 CTTCTTAGAGGGACAAGTGGCGTTTAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 324 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||| ||||||||||||||||||||||| || |||| || | Sbjct 325 ATGCCCTTAGATGTTCGGGGCCGCACGCGCGCTACACTGAAGGAATCAACAGGTCTCTGT 384 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| | ||| |||| |||||| | | || ||| ||||||| ||||| | | || Sbjct 385 CCTGGCCCGAAAGGGTCGGGTAACCCGTTGAACCTCCTTCGTGCTAGGGATTGGGGTGTG 444 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||| | | | | |||||||||| || |||||||||| ||||||||| |||||||||| Sbjct 445 TAATT-CTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATCAGCTCGCGTTGATT 503 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 504 ACGTCCCTGCCCTTTGTA 521 >seq749 Length=517955 Score = 199 bits (220), Expect = 7e-49 Identities = 202/258 (78%), Gaps = 4/258 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 341859 CTTCTTAGAGGGACAAGTGGCGTTTAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 341802 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||| ||||||||||||||||||||||| || |||| || | Sbjct 341801 ATGCCCTTAGATGTTCGGGGCCGCACGCGCGCTACACTGAAGGAATCAACAGGTCTCTGT 341742 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| | ||| |||| |||||| | | || ||| ||||||| ||||| | | || Sbjct 341741 CCTGGCCCGAAAGGGTCGGGTAACCCGTTGAACCTCCTTCGTGCTAGGGATTGGGGTGTG 341682 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||| | | | | |||||||||| || |||||||||| ||||||||| |||||||||| Sbjct 341681 TAATT-CTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATCAGCTCGCGTTGATT 341623 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 341622 ACGTCCCTGCCCTTTGTA 341605 >seq446 Length=2878 Score = 199 bits (220), Expect = 7e-49 Identities = 202/258 (78%), Gaps = 4/258 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 1791 CTTCTTAGAGGGACAAGTGGCGTTTAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 1734 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||| ||||||||||||||||||||||| || |||| || | Sbjct 1733 ATGCCCTTAGATGTTCGGGGCCGCACGCGCGCTACACTGAAGGAATCAACAGGTCTCTGT 1674 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| | ||| |||| |||||| | | || ||| ||||||| ||||| | | || Sbjct 1673 CCTGGCCCGAAAGGGTCGGGTAACCCGTTGAACCTCCTTCGTGCTAGGGATTGGGGTGTG 1614 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||| | | | | |||||||||| || |||||||||| ||||||||| |||||||||| Sbjct 1613 TAATT-CTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATCAGCTCGCGTTGATT 1555 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 1554 ACGTCCCTGCCCTTTGTA 1537 >seq175 Length=6454 Score = 199 bits (220), Expect = 7e-49 Identities = 202/258 (78%), Gaps = 4/258 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 5068 CTTCTTAGAGGGACAAGTGGCGTTTAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 5011 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||| ||||||||||||||||||||||| || |||| || | Sbjct 5010 ATGCCCTTAGATGTTCGGGGCCGCACGCGCGCTACACTGAAGGAATCAACAGGTCTCTGT 4951 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| | ||| |||| |||||| | | || ||| ||||||| ||||| | | || Sbjct 4950 CCTGGCCCGAAAGGGTCGGGTAACCCGTTGAACCTCCTTCGTGCTAGGGATTGGGGTGTG 4891 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||| | | | | |||||||||| || |||||||||| ||||||||| |||||||||| Sbjct 4890 TAATT-CTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATCAGCTCGCGTTGATT 4832 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 4831 ACGTCCCTGCCCTTTGTA 4814 >seq2554 Length=3356 Score = 102 bits (112), Expect = 2e-19 Identities = 107/137 (78%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 194 TGGCCGGAA--GGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251 ||||| ||| |||| |||||| | | || ||| ||||||| ||||| | | | Sbjct 3355 TGGCCCGAAAGGGTC-GGGTAACCCGTTGAACCTCCTTCGTGCTAGGGATTGGGGTGGGT 3297 Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTA 311 |||| | | | | |||||||||| || |||||||||| ||||||||| ||||||||||| Sbjct 3296 AATTCTCCC-CATGAACGAGGAATTCCCAGTAAGCGCGAGTCATCAGCTCGCGTTGATTA 3238 Query 312 CGTCCCTGCCCTTTGTA 328 ||||||||||||||||| Sbjct 3237 CGTCCCTGCCCTTTGTA 3221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947127453952