Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq5867 107 3e-21 seq5677 107 3e-21 seq5467 107 3e-21 seq5377 107 3e-21 seq5253 107 3e-21 seq5152 107 3e-21 seq2853 107 3e-21 seq175 104 4e-20 seq334 98.7 2e-18 >seq5867 Length=1991 Score = 107 bits (118), Expect = 3e-21 Identities = 93/113 (82%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||||| || | || |||| || || | Sbjct 1367 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTTTATGTGCTTGGCTGATAAGCCAAT 1310 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 1309 GGTGCGAAGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCAGAATC 1257 >seq5677 Length=1681 Score = 107 bits (118), Expect = 3e-21 Identities = 93/113 (82%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||||| || | || |||| || || | Sbjct 1223 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTTTATGTGCTTGGCTGATAAGCCAAT 1166 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 1165 GGTGCGAAGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCAGAATC 1113 >seq5467 Length=1275 Score = 107 bits (118), Expect = 3e-21 Identities = 93/113 (82%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||||| || | || |||| || || | Sbjct 537 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTTTATGTGCTTGGCTGATAAGCCAAT 594 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 595 GGTGCGAAGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCAGAATC 647 >seq5377 Length=1104 Score = 107 bits (118), Expect = 3e-21 Identities = 93/113 (82%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||||| || | || |||| || || | Sbjct 641 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTTTATGTGCTTGGCTGATAAGCCAAT 584 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 583 GGTGCGAAGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCAGAATC 531 >seq5253 Length=910 Score = 107 bits (118), Expect = 3e-21 Identities = 93/113 (82%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||||| || | || |||| || || | Sbjct 769 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTTTATGTGCTTGGCTGATAAGCCAAT 826 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 827 GGTGCGAAGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCAGAATC 879 >seq5152 Length=810 Score = 107 bits (118), Expect = 3e-21 Identities = 93/113 (82%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||||| || | || |||| || || | Sbjct 630 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTTTATGTGCTTGGCTGATAAGCCAAT 573 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 572 GGTGCGAAGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCAGAATC 520 >seq2853 Length=43745 Score = 107 bits (118), Expect = 3e-21 Identities = 93/113 (82%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||||| || | || |||| || || | Sbjct 3648 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTTTATGTGCTTGGCTGATAAGCCAAT 3591 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 3590 GGTGCGAAGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCAGAATC 3538 >seq175 Length=6454 Score = 104 bits (114), Expect = 4e-20 Identities = 91/111 (82%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||||| || | || |||| || || | Sbjct 109 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTTTATGTGCTTGGCTGATAAGCCAAT 52 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAA 111 | |||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 51 GGTGCGAAGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCAGAA 1 >seq334 Length=156307 Score = 98.7 bits (108), Expect = 2e-18 Identities = 91/113 (81%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||| |||||| | |||||| | ||||||| || | || |||| || || | Sbjct 91961 GTACGAGAGAAACCGCAGG-TTCAGAC-ATTTGGTTTATGTGCTTGGCTGATAAGCCAAT 92018 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | ||||||||| |||||| |||||||| ||||||||||||||||||||||| Sbjct 92019 GGTGCGAAGCTAACATCTGAGGGATTATGACTGAACGCCTCTAAGTCAGAATC 92071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819139218176