Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1521 132 4e-26 >seq1521 Length=375746 Score = 132 bits (146), Expect = 4e-26 Identities = 179/245 (73%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 61026 TGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGA 61085 ||||||| | || | || ||||| || || || ||| | ||||| ||| |||| | || Sbjct 338793 TGAACCCTTGCTGGAGGACAATCCCCGACGCTTTGTAGTCTTCCCAATCCAGTACCATGA 338852 Query 61086 TATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTT 61145 || |||| |||||||| ||||| ||||| || |||||||| | |||||||||||| | Sbjct 338853 CATCTGGCAAATGTACAAGAAGGCTGAAGCCTCATTCTGGACTGCTGAGGAGGTCGATCT 338912 Query 61146 GTCCAAAGACATGAATGACTGGG-AGCGTTTATCGAGCGGTGAACAACATTTCATTAAAC 61204 |||||||| || | |||||| ||| | | || || |||||||| |||||| | Sbjct 338913 CTCCAAAGATCTGGGTCACTGGGAAGCTCTGAAGGA-CGAGGAACAACACTTCATTTCCC 338971 Query 61205 ATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATT---TAT-TGGAA 61260 |||| | || || ||||| || || || ||||||||||| |||| ||| ||||| Sbjct 338972 ATGTTCTTGCTTTTTTTGCTGCCAGTGATGGAATCGTCAATGAAAATTTGGTATGTGGAA 339031 Query 61261 CGTTT 61265 || || Sbjct 339032 CGGTT 339036 Score = 102 bits (112), Expect = 6e-17 Identities = 149/210 (71%), Gaps = 8/210 (4%) Strand=Plus/Plus Query 61399 TTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGG 61458 ||||||||||| ||||| | || || || ||| || || |||||| | || ||| Sbjct 339636 TTCAATGCCATTGAGACCTTGCCATGTGTCAAAAAGAAGGCAGACTGGGCCATTAAGTGG 339695 Query 61459 ATC----ACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGA 61514 ||| ||||| | ||| ||||| || || | |||| ||||| | || || Sbjct 339696 ATCGGTGACCAGGA----AGCTGACTTTGGAGAGAGAGTAGTGGCCTTTGCTGCAGTGGA 339751 Query 61515 GGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTAT 61574 |||| | || ||||||||| ||||| || ||||| ||| ||||||| || ||| | || Sbjct 339752 GGGTATCTTCTTCAGTGGAAGCTTTGCTGCCATCTTCTGGCTGAAGAAGCGAGGAATCAT 339811 Query 61575 GCCCGGTCTGACCTTCAGCAATGAGTTGAT 61604 ||| || || |||||||| |||||| |||| Sbjct 339812 GCCAGGGCTTACCTTCAGTAATGAGCTGAT 339841 Score = 86.0 bits (94), Expect = 5e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 61288 GAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTAC 61347 ||||| || |||||||| || ||||||||||| ||||| || ||||||| || |||||| Sbjct 339243 GAGGCCCGATGTTTCTATGGATTCCAGATTGCTATGGAAAACATCCACTCCGAAATGTAC 339302 Query 61348 AGTGTTCTCATCGATACGTACATCA 61372 || | ||||| ||||| ||||||| Sbjct 339303 AGCTTACTCATTGATACCTACATCA 339327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397530889387760