Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq294 187 4e-45 seq143 187 4e-45 >seq294 Length=160532 Score = 187 bits (206), Expect = 4e-45 Identities = 201/257 (78%), Gaps = 7/257 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||| ||| |||| ||||||||||| |||||| | Sbjct 45277 GTACAAAGGGCAGGGACGTAATCAACGCGAACTT-ATGATTCGCGCTTACTGGGAATT-C 45220 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | | |||| || | ||||| | ||||| | | ||||| | || Sbjct 45219 CTCGTTCATGGGGAT-AATTACACACCCCAATCCCTAGCACGAAGGAGGTTCAACGGGTT 45161 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| |||| | ||| | | || ||||| | | ||||||||||||||||||| Sbjct 45160 ACCCGACCCTTTCGGGCCAGGACAGATACCTGTTGATTCCTTCAGTGTAGCGCGCGTGCG 45101 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 |||| |||||||||||||||||||||||||||||||| ||||| || |||| ||||| Sbjct 45100 GCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTAAAC 45043 Query 240 GGC-CATCTCCCTCGAA 255 | | | | |||||| || Sbjct 45042 GCCACTTGTCCCTCTAA 45026 Score = 150 bits (166), Expect = 3e-34 Identities = 172/218 (79%), Gaps = 10/218 (5%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||| |||||||||| ||||||||| ||| |||| ||||||||||| |||||| | Sbjct 27433 GTACAAAGG-CAGGGACGTAATCAACGCGAACTT-ATGATTCGCGCTTACT-GGAATT-C 27378 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 || ||| | | | |||| || | ||||| | ||||| | | ||||| | || Sbjct 27377 CT-GTTCATGGGGAT-AATTACACACC-CAATCCCTAGCACGAAGGAGGTTCAACGGGTT 27321 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| |||| | ||| | | || ||||| | | ||||||||||||||||||| Sbjct 27320 ACCCGACCCTTTCGGGCCAGGACA-ATACCTGTTGATTCCTTCAGTGTAGCGCGCGTGCG 27262 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| ||||||||||||||||||||||||||||||||| Sbjct 27261 GCCC-GAACATCTAAGGGCATCACAGACCTGTTATTGC 27225 Score = 111 bits (122), Expect = 2e-22 Identities = 165/220 (75%), Gaps = 13/220 (6%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGA-CGTAGTCAACGCGAGCTTGATGACTCGCGC-TTACTAGGAATT 58 |||||||||||||||| ||| ||||||||| ||| |||| |||||| ||||| |||| | Sbjct 9563 GTACAAAGGGCAGGGACCGTCATCAACGCGAACTT-ATGATTCGCGCTTTACTGGGAA-T 9506 Query 59 TCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGA 117 |||||||| | | |||| || | ||||| | ||||| | | ||||| | Sbjct 9505 TCCTCGTTCCATGGGCATAATTACACACCCCAATCCCTAGCACGA--AGAGTTCAACGGG 9448 Query 118 TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTG 177 ||||||| ||| | |||| ||| | | || ||||| | | ||||||||||| ||||| Sbjct 9447 TTACCCGACCCTTTGGGCC-AGGACAGATACCTGTTGATTCCTTCAGTGTAGCG-GCGTG 9390 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||| || | ||| || |||||| |||||||||||||||| Sbjct 9389 CGGGCCCG-ACA--TATGGGCAT-ACAGACCTGTTATTGC 9354 >seq143 Length=4187197 Score = 187 bits (206), Expect = 4e-45 Identities = 201/257 (78%), Gaps = 7/257 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||| ||| |||| ||||||||||| |||||| | Sbjct 4153264 GTACAAAGGGCAGGGACGTAATCAACGCGAACTT-ATGATTCGCGCTTACTGGGAATT-C 4153207 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | | |||| || | ||||| | ||||| | | ||||| | || Sbjct 4153206 CTCGTTCATGGGGAT-AATTACACACCCCAATCCCTAGCACGAAGGAGGTTCAACGGGTT 4153148 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| |||| | ||| | | || ||||| | | ||||||||||||||||||| Sbjct 4153147 ACCCGACCCTTTCGGGCCAGGACAGATACCTGTTGATTCCTTCAGTGTAGCGCGCGTGCG 4153088 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 |||| |||||||||||||||||||||||||||||||| ||||| || |||| ||||| Sbjct 4153087 GCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTAAAC 4153030 Query 240 GGC-CATCTCCCTCGAA 255 | | | | |||||| || Sbjct 4153029 GCCACTTGTCCCTCTAA 4153013 Score = 187 bits (206), Expect = 4e-45 Identities = 201/257 (78%), Gaps = 7/257 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||| ||| |||| ||||||||||| |||||| | Sbjct 4171526 GTACAAAGGGCAGGGACGTAATCAACGCGAACTT-ATGATTCGCGCTTACTGGGAATT-C 4171469 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | | |||| || | ||||| | ||||| | | ||||| | || Sbjct 4171468 CTCGTTCATGGGGAT-AATTACACACCCCAATCCCTAGCACGAAGGAGGTTCAACGGGTT 4171410 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| |||| | ||| | | || ||||| | | ||||||||||||||||||| Sbjct 4171409 ACCCGACCCTTTCGGGCCAGGACAGATACCTGTTGATTCCTTCAGTGTAGCGCGCGTGCG 4171350 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 |||| |||||||||||||||||||||||||||||||| ||||| || |||| ||||| Sbjct 4171349 GCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTAAAC 4171292 Query 240 GGC-CATCTCCCTCGAA 255 | | | | |||||| || Sbjct 4171291 GCCACTTGTCCCTCTAA 4171275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751997391970