Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08]
358 sequences; 685,793,667 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq294 187 4e-45
seq143 187 4e-45
>seq294
Length=160532
Score = 187 bits (206), Expect = 4e-45
Identities = 201/257 (78%), Gaps = 7/257 (3%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||||||||| ||| |||| ||||||||||| |||||| |
Sbjct 45277 GTACAAAGGGCAGGGACGTAATCAACGCGAACTT-ATGATTCGCGCTTACTGGGAATT-C 45220
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119
|||||| | | | |||| || | ||||| | ||||| | | ||||| | ||
Sbjct 45219 CTCGTTCATGGGGAT-AATTACACACCCCAATCCCTAGCACGAAGGAGGTTCAACGGGTT 45161
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||||| ||| |||| | ||| | | || ||||| | | |||||||||||||||||||
Sbjct 45160 ACCCGACCCTTTCGGGCCAGGACAGATACCTGTTGATTCCTTCAGTGTAGCGCGCGTGCG 45101
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239
|||| |||||||||||||||||||||||||||||||| ||||| || |||| |||||
Sbjct 45100 GCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTAAAC 45043
Query 240 GGC-CATCTCCCTCGAA 255
| | | | |||||| ||
Sbjct 45042 GCCACTTGTCCCTCTAA 45026
Score = 150 bits (166), Expect = 3e-34
Identities = 172/218 (79%), Gaps = 10/218 (5%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||| |||||||||| ||||||||| ||| |||| ||||||||||| |||||| |
Sbjct 27433 GTACAAAGG-CAGGGACGTAATCAACGCGAACTT-ATGATTCGCGCTTACT-GGAATT-C 27378
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119
|| ||| | | | |||| || | ||||| | ||||| | | ||||| | ||
Sbjct 27377 CT-GTTCATGGGGAT-AATTACACACC-CAATCCCTAGCACGAAGGAGGTTCAACGGGTT 27321
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||||| ||| |||| | ||| | | || ||||| | | |||||||||||||||||||
Sbjct 27320 ACCCGACCCTTTCGGGCCAGGACA-ATACCTGTTGATTCCTTCAGTGTAGCGCGCGTGCG 27262
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217
|||| |||||||||||||||||||||||||||||||||
Sbjct 27261 GCCC-GAACATCTAAGGGCATCACAGACCTGTTATTGC 27225
Score = 111 bits (122), Expect = 2e-22
Identities = 165/220 (75%), Gaps = 13/220 (6%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGA-CGTAGTCAACGCGAGCTTGATGACTCGCGC-TTACTAGGAATT 58
|||||||||||||||| ||| ||||||||| ||| |||| |||||| ||||| |||| |
Sbjct 9563 GTACAAAGGGCAGGGACCGTCATCAACGCGAACTT-ATGATTCGCGCTTTACTGGGAA-T 9506
Query 59 TCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGA 117
|||||||| | | |||| || | ||||| | ||||| | | ||||| |
Sbjct 9505 TCCTCGTTCCATGGGCATAATTACACACCCCAATCCCTAGCACGA--AGAGTTCAACGGG 9448
Query 118 TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTG 177
||||||| ||| | |||| ||| | | || ||||| | | ||||||||||| |||||
Sbjct 9447 TTACCCGACCCTTTGGGCC-AGGACAGATACCTGTTGATTCCTTCAGTGTAGCG-GCGTG 9390
Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217
||| || | ||| || |||||| ||||||||||||||||
Sbjct 9389 CGGGCCCG-ACA--TATGGGCAT-ACAGACCTGTTATTGC 9354
>seq143
Length=4187197
Score = 187 bits (206), Expect = 4e-45
Identities = 201/257 (78%), Gaps = 7/257 (3%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||||||||| ||| |||| ||||||||||| |||||| |
Sbjct 4153264 GTACAAAGGGCAGGGACGTAATCAACGCGAACTT-ATGATTCGCGCTTACTGGGAATT-C 4153207
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119
|||||| | | | |||| || | ||||| | ||||| | | ||||| | ||
Sbjct 4153206 CTCGTTCATGGGGAT-AATTACACACCCCAATCCCTAGCACGAAGGAGGTTCAACGGGTT 4153148
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||||| ||| |||| | ||| | | || ||||| | | |||||||||||||||||||
Sbjct 4153147 ACCCGACCCTTTCGGGCCAGGACAGATACCTGTTGATTCCTTCAGTGTAGCGCGCGTGCG 4153088
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239
|||| |||||||||||||||||||||||||||||||| ||||| || |||| |||||
Sbjct 4153087 GCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTAAAC 4153030
Query 240 GGC-CATCTCCCTCGAA 255
| | | | |||||| ||
Sbjct 4153029 GCCACTTGTCCCTCTAA 4153013
Score = 187 bits (206), Expect = 4e-45
Identities = 201/257 (78%), Gaps = 7/257 (3%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||||||||| ||| |||| ||||||||||| |||||| |
Sbjct 4171526 GTACAAAGGGCAGGGACGTAATCAACGCGAACTT-ATGATTCGCGCTTACTGGGAATT-C 4171469
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119
|||||| | | | |||| || | ||||| | ||||| | | ||||| | ||
Sbjct 4171468 CTCGTTCATGGGGAT-AATTACACACCCCAATCCCTAGCACGAAGGAGGTTCAACGGGTT 4171410
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||||| ||| |||| | ||| | | || ||||| | | |||||||||||||||||||
Sbjct 4171409 ACCCGACCCTTTCGGGCCAGGACAGATACCTGTTGATTCCTTCAGTGTAGCGCGCGTGCG 4171350
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239
|||| |||||||||||||||||||||||||||||||| ||||| || |||| |||||
Sbjct 4171349 GCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTAAAC 4171292
Query 240 GGC-CATCTCCCTCGAA 255
| | | | |||||| ||
Sbjct 4171291 GCCACTTGTCCCTCTAA 4171275
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751997391970
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |