Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq294 82.4 4e-14 seq143 82.4 4e-14 >seq294 Length=160532 Score = 82.4 bits (90), Expect = 4e-14 Identities = 92/120 (77%), Gaps = 5/120 (4%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGG-TGCCGAGCGAGTCAAAATGAT--AACATCG 57 |||||||||||||||| |||| || || ||| ||||||| ||| ||| || Sbjct 44751 GAACCCAAAGACTTTGGTTTCCCGGGGGGCTGCTCGCCGAGTCAT--TGAAGCAACTCCG 44694 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 | ||| ||||| ||||| ||||| ||| | ||||||||||||||||||||||||||| Sbjct 44693 GCGGATTGCTAGTTGGCATCGTTTATGGTCAGAACTACGACGGTATCTGATCGTCTTCGA 44634 Score = 71.6 bits (78), Expect = 8e-11 Identities = 88/117 (75%), Gaps = 5/117 (4%) Strand=Plus/Minus Query 3 ACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGAT--AACATCGCCC 60 |||||||||||||| |||| || | ||| ||||||| ||| ||| || | Sbjct 26917 ACCCAAAGACTTTGGTTTCCCGGGGGCTGCTCGCCGAGTCAT--TGAAGCAACTCCGGCG 26860 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| ||||| ||||| ||| | ||| | ||||||||||||||||||||||||||| Sbjct 26859 GATTGCTAGTTGGCATCGTT-ATGGTCAGAACTACGACGGTATCTGATCGTCTTCGA 26804 >seq143 Length=4187197 Score = 82.4 bits (90), Expect = 4e-14 Identities = 92/120 (77%), Gaps = 5/120 (4%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGG-TGCCGAGCGAGTCAAAATGAT--AACATCG 57 |||||||||||||||| |||| || || ||| ||||||| ||| ||| || Sbjct 4152738 GAACCCAAAGACTTTGGTTTCCCGGGGGGCTGCTCGCCGAGTCAT--TGAAGCAACTCCG 4152681 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 | ||| ||||| ||||| ||||| ||| | ||||||||||||||||||||||||||| Sbjct 4152680 GCGGATTGCTAGTTGGCATCGTTTATGGTCAGAACTACGACGGTATCTGATCGTCTTCGA 4152621 Score = 82.4 bits (90), Expect = 4e-14 Identities = 92/120 (77%), Gaps = 5/120 (4%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGG-TGCCGAGCGAGTCAAAATGAT--AACATCG 57 |||||||||||||||| |||| || || ||| ||||||| ||| ||| || Sbjct 4171000 GAACCCAAAGACTTTGGTTTCCCGGGGGGCTGCTCGCCGAGTCAT--TGAAGCAACTCCG 4170943 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 | ||| ||||| ||||| ||||| ||| | ||||||||||||||||||||||||||| Sbjct 4170942 GCGGATTGCTAGTTGGCATCGTTTATGGTCAGAACTACGACGGTATCTGATCGTCTTCGA 4170883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278399065620