Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq321 179 7e-43 seq294 179 7e-43 seq143 179 7e-43 >seq321 Length=722770 Score = 179 bits (198), Expect = 7e-43 Identities = 194/251 (77%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTA--GC 128 |||||||||||||||||||||||||||||||||||||| || | | |||| || || Sbjct 234871 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCGATT-CACCTGTACAATACTGC 234813 Query 129 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC-CGCCGTAAT 187 |||||||||| || |||||| | |||||||||||||||||||| | || || ||||| Sbjct 234812 ATGGAATAATGGAGTAGGACCT-CGGTTCTATTTTGTTGGTTTTCGGAACACGAGGTAAT 234754 Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 ||||| ||| | | |||||| | |||| || ||||||||||||||||||| Sbjct 234753 GATTAGGAGGTACTGACGGGGGCATTTGTATGGCGGGGTTAGAGGTGAAATTCTTGGATC 234694 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 |||| |||| |||||||| || ||||| |||||||||||||||| ||||| Sbjct 234693 CTCGCCAGACGGCCTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCA-AGAACG 234635 Query 308 AAAGTTAGGGG 318 ||||| || || Sbjct 234634 AAAGTCAGAGG 234624 >seq294 Length=160532 Score = 179 bits (198), Expect = 7e-43 Identities = 193/250 (77%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT-GCTCGAATACATTAGCA 129 |||||||||||||||||||||||||||||||||||||| || || | | | ||| Sbjct 44385 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCGATTCGCCTGCACAATGGTGCA 44444 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC-CGCCGTAATG 188 ||||||||| ||||||||| | |||||||||||||||||||| | || || |||||| Sbjct 44445 TGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTTTCGGAACACGAGGTAATG 44503 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 ||||| ||||| | |||||| | |||| || ||||||||||||||||||| Sbjct 44504 ATTAAGAGGGACTGACGGGGGCATTCGTATGGCGGGGTTAGAGGTGAAATTCTTGGATCC 44563 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 |||| |||| |||||||| || ||||| |||||||||||| ||| |||||| Sbjct 44564 TCGCCAGACGGCCTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAGTCA-AGAACGA 44622 Query 309 AAGTTAGGGG 318 |||| || || Sbjct 44623 AAGTCAGAGG 44632 Score = 159 bits (176), Expect = 6e-37 Identities = 191/251 (76%), Gaps = 9/251 (4%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATT--AGC 128 |||||||||||||||||||||||||||||||||||||| || | ||| | || Sbjct 26558 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCGATTCGCCTGCCACAATGGTGC 26617 Query 129 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC-CGCCGTAAT 187 |||||||||| ||||||||| | |||||||| |||||||||||| | || || ||||| Sbjct 26618 ATGGAATAATGGAATAGGACCT-CGGTTCTA-TTTGTTGGTTTC-GGAACACGAGGTAAT 26674 Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||| ||||| | ||||| || |||| || ||||||||||||||||||| Sbjct 26675 GATTAAGAGGGACTGACGGGGCATTC-GTATGGCGGGGTTAGAGGTGAAATTCTTGGATC 26733 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 |||| |||| |||||||| || ||||| |||||||||||| ||| ||| Sbjct 26734 CTCGCCAGACGGCCTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAGTCA--AGACG 26791 Query 308 AAAGTTAGGGG 318 ||||| || || Sbjct 26792 AAAGTCAGAGG 26802 Score = 109 bits (120), Expect = 1e-21 Identities = 184/249 (74%), Gaps = 17/249 (7%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCAT 130 |||||||||||||||| ||||||||||||||||||||| | || | | | |||| Sbjct 8706 ACTTTTACTTTGAAAA-ATTAGAGTGTTCAAAGCAGGCGATCGCCTGCACAATGGTGCAT 8764 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGC-CGTAATGA 189 |||||||| ||||| || | ||| |||| |||||| |||| ||| | | ||||||| Sbjct 8765 GGAATAAT-GAATA--ACCT-CGG-TCTA--TTGTTGTTTTC--GGAACACAGGTAATGA 8815 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 |||| ||||| | |||||| || ||| | || ||||||||||||||| ||| Sbjct 8816 TTAAGAGGGACTGACGGGGGCATC-GTA-TGGCGGGTTAGAGGTGAAATTCTT-GATCCT 8872 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 |||| |||| || |||| || ||||| |||||||||||| ||| ||||||| Sbjct 8873 CGCCAGACGGCCTAC-ACG-AAGCATTTGCCAAGCATGTTTTCATTAGTCA-AGAACGAA 8929 Query 310 AGTTAGGGG 318 ||| || || Sbjct 8930 AGTCAGAGG 8938 >seq143 Length=4187197 Score = 179 bits (198), Expect = 7e-43 Identities = 193/250 (77%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT-GCTCGAATACATTAGCA 129 |||||||||||||||||||||||||||||||||||||| || || | | | ||| Sbjct 4152372 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCGATTCGCCTGCACAATGGTGCA 4152431 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC-CGCCGTAATG 188 ||||||||| ||||||||| | |||||||||||||||||||| | || || |||||| Sbjct 4152432 TGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTTTCGGAACACGAGGTAATG 4152490 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 ||||| ||||| | |||||| | |||| || ||||||||||||||||||| Sbjct 4152491 ATTAAGAGGGACTGACGGGGGCATTCGTATGGCGGGGTTAGAGGTGAAATTCTTGGATCC 4152550 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 |||| |||| |||||||| || ||||| |||||||||||| ||| |||||| Sbjct 4152551 TCGCCAGACGGCCTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAGTCA-AGAACGA 4152609 Query 309 AAGTTAGGGG 318 |||| || || Sbjct 4152610 AAGTCAGAGG 4152619 Score = 179 bits (198), Expect = 7e-43 Identities = 193/250 (77%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT-GCTCGAATACATTAGCA 129 |||||||||||||||||||||||||||||||||||||| || || | | | ||| Sbjct 4170634 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCGATTCGCCTGCACAATGGTGCA 4170693 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC-CGCCGTAATG 188 ||||||||| ||||||||| | |||||||||||||||||||| | || || |||||| Sbjct 4170694 TGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTTTCGGAACACGAGGTAATG 4170752 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 ||||| ||||| | |||||| | |||| || ||||||||||||||||||| Sbjct 4170753 ATTAAGAGGGACTGACGGGGGCATTCGTATGGCGGGGTTAGAGGTGAAATTCTTGGATCC 4170812 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 |||| |||| |||||||| || ||||| |||||||||||| ||| |||||| Sbjct 4170813 TCGCCAGACGGCCTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAGTCA-AGAACGA 4170871 Query 309 AAGTTAGGGG 318 |||| || || Sbjct 4170872 AAGTCAGAGG 4170881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915196723584