Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq294 178 5e-42 seq143 178 5e-42 seq197 91.5 6e-16 >seq294 Length=160532 Score = 178 bits (196), Expect = 5e-42 Identities = 226/315 (72%), Gaps = 36/315 (11%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCA- 463 || ||||||||| |||||||||||||||||||||||| | |||||| |||||||| | Sbjct 47394 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCGAGTCATTGGGTGTTAC 47453 Query 464 --AACCCGTGCGCGTAATGAAAGTGAA--------CGG---------AGGTGGGAACCCG 504 |||| ||| |||||||||||| ||| |||||||| ||| Sbjct 47454 GAAACCTAAAGGCGCAATGAAAGTGAAGGCAGCCTCGGGTTCTGCCCAGGTGGGATCCCC 47513 Query 505 TGA------------GGGTGCACCATCGACCGATCCTGATGTCTTCG----GATGGATTT 548 | ||| |||||| || || ||| | | | | | || || Sbjct 47514 GGTCCGCCGCGGCCGGGGCGCACCACCGGCCCGTCCCGTTCGCATTGCGTCGAAGGGGCG 47573 Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| |||||| || ||||| ||||||||||||||||||||||| ||| |||| |||| Sbjct 47574 GAGCAAGAGCGTACACGTTGGTACCCGAAAGATGGTGAACTATGCTTGAGTAGGACGAAG 47633 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||| |||||| ||||||||||||| ||||||||||||||||| || | Sbjct 47634 TCAGAGGAAACTCTGATGGAGGTCCGCAGCGGTTCTGACGTGCAAATCGATCGTCGAACT 47693 Query 669 TGGGTATAGGGGCGA 683 || | |||||||||| Sbjct 47694 TGAGCATAGGGGCGA 47708 Score = 165 bits (182), Expect = 3e-38 Identities = 225/315 (71%), Gaps = 38/315 (12%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCA- 463 || ||||||||| |||||||||||||||||||||||| | |||||| |||||||| | Sbjct 11653 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCGAGTCATTGGGTGTTAC 11712 Query 464 --AACCCGTGCGCGTAATGAAAGTGAA--------CGG---------AGGTGGGAACCCG 504 |||| ||| |||||||||||| ||| |||||||| ||| Sbjct 11713 GAAACCTAAAGGCGCAATGAAAGTGAAGGCAGCCTCGGGTTCTGCCCAGGTGGGATCCCC 11772 Query 505 TGA------------GGGTGCACCATCGACCGATCCTGATGTCTTCG----GATGGATTT 548 | ||| |||||| || || ||| | | | | | || || Sbjct 11773 GGTCCGCCGCGGCCGGGGCGCACCACCGGCCCGTCCCGTTCGCATTGCGTCGAAGGGGCG 11832 Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| |||||| || ||||| ||||||||||||||||||||||| ||| |||| |||| Sbjct 11833 GAGCAAGAGCGTACACGTTGGTACCCGAAAGATGGTGAACTATGC-TGAGTAGGACGAAG 11891 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 ||||| |||||||| |||||| ||||||||||||| ||||||||||||||||| || | Sbjct 11892 TCAGAG-AAACTCTGATGGAGGTCCGCAGCGGTTCTGACGTGCAAATCGATCGTCGAACT 11950 Query 669 TGGGTATAGGGGCGA 683 || | |||||||||| Sbjct 11951 TGAGCATAGGGGCGA 11965 Score = 158 bits (174), Expect = 5e-36 Identities = 221/310 (71%), Gaps = 39/310 (13%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCA- 463 || ||||||||| |||||||||||||||| ||||||| | |||||| |||||||| | Sbjct 29528 CGACCCGTCTTGAAACACGGACCAAGGAG-CTAACATGTGCGCGAGTCATTGGGTGTTAC 29586 Query 464 --AACCCGTGCGCGTAATGAAAGTGAA--------CGG--------AGGTGGGAACCCGT 505 |||| ||| |||||||||||| ||| |||||||| ||| Sbjct 29587 GAAACCTAAAGGCGCAATGAAAGTGAAGGCAGCCTCGGTTCTGCCCAGGTGGGATCCCCG 29646 Query 506 GA-----------GGGTGCACCATCGACCGATCCTG-----ATGTCTTCGGATGGATTTG 549 | ||| |||||| || || ||| | || | ||| | || | Sbjct 29647 GTCCGCCGCGGCCGGGCGCACCACCGGCCCGTCCCGTTCGCATTGCGTCGAAGGGGC--G 29704 Query 550 AGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGC 609 || |||||| || ||||| ||||||||||||||||||||||| ||| |||| |||| Sbjct 29705 AGCAAGAGCGTACACGTTGGTACCCGAAAGATGGTGAACTATGCTTGAGTAGGACGAAGT 29764 Query 610 CAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTT 669 |||||||||| ||| |||||| ||||||||||||| ||||||||||||||||| || || Sbjct 29765 CAGAGGAAAC-CTGATGGAGGTCCGCAGCGGTTCTGACGTGCAAATCGATCGTCGAACTT 29823 Query 670 GGGTATAGGG 679 | | |||||| Sbjct 29824 GAGCATAGGG 29833 >seq143 Length=4187197 Score = 178 bits (196), Expect = 5e-42 Identities = 226/315 (72%), Gaps = 36/315 (11%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCA- 463 || ||||||||| |||||||||||||||||||||||| | |||||| |||||||| | Sbjct 4155381 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCGAGTCATTGGGTGTTAC 4155440 Query 464 --AACCCGTGCGCGTAATGAAAGTGAA--------CGG---------AGGTGGGAACCCG 504 |||| ||| |||||||||||| ||| |||||||| ||| Sbjct 4155441 GAAACCTAAAGGCGCAATGAAAGTGAAGGCAGCCTCGGGTTCTGCCCAGGTGGGATCCCC 4155500 Query 505 TGA------------GGGTGCACCATCGACCGATCCTGATGTCTTCG----GATGGATTT 548 | ||| |||||| || || ||| | | | | | || || Sbjct 4155501 GGTCCGCCGCGGCCGGGGCGCACCACCGGCCCGTCCCGTTCGCATTGCGTCGAAGGGGCG 4155560 Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| |||||| || ||||| ||||||||||||||||||||||| ||| |||| |||| Sbjct 4155561 GAGCAAGAGCGTACACGTTGGTACCCGAAAGATGGTGAACTATGCTTGAGTAGGACGAAG 4155620 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||| |||||| ||||||||||||| ||||||||||||||||| || | Sbjct 4155621 TCAGAGGAAACTCTGATGGAGGTCCGCAGCGGTTCTGACGTGCAAATCGATCGTCGAACT 4155680 Query 669 TGGGTATAGGGGCGA 683 || | |||||||||| Sbjct 4155681 TGAGCATAGGGGCGA 4155695 Score = 178 bits (196), Expect = 5e-42 Identities = 226/315 (72%), Gaps = 36/315 (11%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCA- 463 || ||||||||| |||||||||||||||||||||||| | |||||| |||||||| | Sbjct 4173644 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCGAGTCATTGGGTGTTAC 4173703 Query 464 --AACCCGTGCGCGTAATGAAAGTGAA--------CGG---------AGGTGGGAACCCG 504 |||| ||| |||||||||||| ||| |||||||| ||| Sbjct 4173704 GAAACCTAAAGGCGCAATGAAAGTGAAGGCAGCCTCGGGTTCTGCCCAGGTGGGATCCCC 4173763 Query 505 TGA------------GGGTGCACCATCGACCGATCCTGATGTCTTCG----GATGGATTT 548 | ||| |||||| || || ||| | | | | | || || Sbjct 4173764 GGTCCGCCGCGGCCGGGGCGCACCACCGGCCCGTCCCGTTCGCATTGCGTCGAAGGGGCG 4173823 Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| |||||| || ||||| ||||||||||||||||||||||| ||| |||| |||| Sbjct 4173824 GAGCAAGAGCGTACACGTTGGTACCCGAAAGATGGTGAACTATGCTTGAGTAGGACGAAG 4173883 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||| |||||| ||||||||||||| ||||||||||||||||| || | Sbjct 4173884 TCAGAGGAAACTCTGATGGAGGTCCGCAGCGGTTCTGACGTGCAAATCGATCGTCGAACT 4173943 Query 669 TGGGTATAGGGGCGA 683 || | |||||||||| Sbjct 4173944 TGAGCATAGGGGCGA 4173958 Score = 143 bits (158), Expect = 1e-31 Identities = 115/136 (85%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| |||||| || ||||| ||||||||||||||||||||||| ||| |||| |||| Sbjct 614187 GAGCAAGAGCGTACACGTTGGTACCCGAAAGATGGTGAACTATGCTTGAGTAGGACGAAG 614128 Query 609 CCAGAGGAAACTCTGGTGGAGGCTC-GCAGCGGTTCTGGCGTGCAAATCGATCGTCAAAT 667 |||||||||||||| |||| ||| |||||||||||| ||||||||||||||||| || Sbjct 614127 TCAGAGGAAACTCTGATGGAA-CTCTGCAGCGGTTCTGACGTGCAAATCGATCGTCGAAC 614069 Query 668 TTGGGTATAGGGGCGA 683 || | |||||||||| Sbjct 614068 GTGAGCATAGGGGCGA 614053 Score = 98.7 bits (108), Expect = 4e-18 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || |||| |||||| | | ||||| ||||||| Sbjct 614712 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 614653 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 | | || ||| |||||| | |||| || |||| |||| ||||||| |||||| Sbjct 614652 ACTTCCCCGAGTCCGATAACAAACAAATACCGTGAGGAAAAGTTGAAAAGAACTTTG 614596 Score = 77.0 bits (84), Expect = 1e-11 Identities = 51/57 (89%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGT 461 || ||||||||| |||||||||||||||||||||||||| |||||| |||||||| Sbjct 614372 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTGCGCGAGTCATTGGGTGT 614316 >seq197 Length=1358169 Score = 91.5 bits (100), Expect = 6e-16 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 577 AAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCA 636 ||||| ||| ||||| | |||||||| ||||||||| |||| |||||| |||| Sbjct 347853 AAGATAGTGTACTATTATTAGGTAGGGTGATATCAGAGGAAAATCTGATGGAGGTACGCA 347912 Query 637 GCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 |||||||||| ||||||||||||||||||| Sbjct 347913 GCGGTTCTGGTGTGCAAATCGATCGTCAAA 347942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079992320900